FastQCFastQC Report
Tue 15 Aug 2023
HW22CDRX2_l01_n01_scN1update.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHW22CDRX2_l01_n01_scN1update.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17
Sequences flagged as poor quality0
Sequence length28
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTTCGGTTAGGCCCGTGTCTGGCAGT15.88235294117647No Hit
TTCCGGTTCGAGATAAAGACGTATGACC15.88235294117647No Hit
ACGTACTCAATCAGATTAGTATCCAACC15.88235294117647No Hit
GAACACTAGCCGGATAGTCTGGAAATTG15.88235294117647No Hit
GTGACCCGGTCCTACCTATCGCTAACAG15.88235294117647No Hit
TCCCTCACATCGATACGCCCACACACCC15.88235294117647No Hit
CCTTCAGAGCAAGTGCATTCTTAACTTT15.88235294117647No Hit
GACCTTCTCTGATGGTTCCCTTGTGGTT15.88235294117647No Hit
AACCCAACAAATGATGAATGGGCTTGGC15.88235294117647No Hit
TTGAGTGCACTACCCTATGTGTTTGGTC15.88235294117647No Hit
GATCAACTGGGCCTAAAACGGGTGGGCA15.88235294117647No Hit
GGGGTGTTGGCGTGCTTTCGGGCTAGAG15.88235294117647No Hit
TATACCTAGGGCAGAGACTTACCGGCCA15.88235294117647No Hit
TGTTCATAGCCATGCCGGACACCCAGAT15.88235294117647No Hit
CTGTACCTCGACTCCTGGCTAGCTCCGG15.88235294117647No Hit
ACCGTCAAGGTCTACTCGCCTACTTACC15.88235294117647No Hit
TTGCCTGGTCACCGACCCCAATCTACGA15.88235294117647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)