HVYT3AFXY_n02_1920.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVYT3AFXY_n02_1920.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10619122
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	181083	1.7052539748578084	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	89892	0.8465106625576013	No Hit
AAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGC	11168	0.10516877007345805	Illumina Single End PCR Primer 1 (100% over 49bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	42780	38.148476	47
CCGTATC	41900	37.93898	49
TCGCCGT	42820	37.52435	46
GCCGTAT	44205	37.156235	48
GGTCGCC	45745	36.868862	44
GTCGCCG	45835	36.744057	45
CGTATCA	44275	36.51253	50
AAAGGGG	32615	36.357407	66
GTGGTCG	47435	35.688114	42
AAGGGGG	33685	35.513897	67
TGGTCGC	47145	35.224678	43
CTCGGTG	47050	35.206207	38
GTATCAT	44420	35.17997	51
GGTGGTC	48905	34.80845	41
ATCTCGG	47420	34.504578	36
TCTCGGT	47865	34.330032	37
GATCTCG	47305	34.307312	35
AGGGGGG	38035	33.900265	68
TCGGTGG	50845	33.76286	39
CGGTGGT	51090	33.730312	40