HVYH3BGXB_n01_9G-ABF3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVYH3BGXB_n01_9G-ABF3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1582076
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA	5789	0.3659116249788253	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCATTCATCTCGTATGC	5010	0.31667252394954476	TruSeq Adapter, Index 3 (97% over 36bp)
CTGTTACTACCCTACACTCATACTTGGATCACAGCCACTAGTAGCCTATG	2804	0.17723548046996476	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	2584	0.16332970097517438	No Hit
CAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTA	2531	0.15997967227870216	No Hit
CCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTT	2088	0.13197848902328332	No Hit
CAGCATTAGAGGTAACAACTAGAGTACAACAGCCACTAGTAGCCTATGCT	2007	0.12685863384565596	No Hit
TGATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGA	1790	0.11314247861670362	No Hit
CTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGAGGTTAGA	1667	0.10536788371734354	No Hit
TATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATA	1601	0.10119614986890642	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	655	60.37369	46
GTATGCC	660	59.916313	45
CGTATGC	665	58.93957	44
GCACACG	675	58.07006	11
CTCGTAT	695	56.40255	42
TCGTATG	705	55.595486	43
ACGTCTG	725	54.54623	15
CACGTCT	720	54.438965	14
AGTCACT	735	53.339767	28
GTCACTC	740	52.979366	29
AGCACAC	765	51.23667	10
CAGTCAC	770	50.91523	27
GCCGTCT	780	50.698425	49
CCAGTCA	800	49.441902	26
CACACGT	795	49.30477	12
TCCAGTC	820	48.662865	25
CATCTCG	810	48.39784	39
GAGCACA	845	46.390263	9
TCTAGTT	1315	46.045357	7
TCACTCA	855	45.85493	30