HVYH3BGXB_n01_1G-ABF3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVYH3BGXB_n01_1G-ABF3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1314902
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA	5276	0.40124663282891043	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	2706	0.20579480447972548	No Hit
CAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTA	2597	0.19750521331627757	No Hit
CTGTTACTACCCTACACTCATACTTGGATCACAGCCACTAGTAGCCTATG	2247	0.1708872600391512	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGAATATCTCGTATGC	2236	0.17005069579329868	TruSeq Adapter, Index 7 (97% over 37bp)
CCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTT	2011	0.15293915440086028	No Hit
TGATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGA	1788	0.13597971559857694	No Hit
CAGCATTAGAGGTAACAACTAGAGTACAACAGCCACTAGTAGCCTATGCT	1705	0.1296674581071441	No Hit
TATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATA	1703	0.1295153555169891	No Hit
CTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGAGGTTAGA	1468	0.11164330117377569	No Hit
TCCAGCATTAGAGGTAACAACTAGAGTACAACAGCCACTAGTAGCCTATG	1350	0.10266924835463022	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	270	57.031864	44
GTATGCC	305	49.33979	45
GCACACG	330	46.664207	11
CTCGTAT	325	46.307014	42
TATGCCG	325	46.30349	46
TCGTATG	325	46.30349	43
ACGTCTG	350	43.99768	15
CACACGT	360	43.747696	12
TACTCTA	1510	42.650005	4
TCTAGTT	1520	41.91047	7
AGCACAC	370	41.61943	10
GTACTCT	1540	41.59188	3
GAGCACA	405	38.889797	9
CACGTCT	400	38.49797	14
CGGAATA	400	37.625877	34
AGTCACC	425	36.237522	28
GCCGTCT	425	36.232006	49
ACTCTAG	2065	35.93304	5
CAGTCAC	440	35.00082	27
ACCTACT	625	34.722134	33