FastQCFastQC Report
Wed 1 Nov 2017
HVY3KBCXY_l02n02_input_ctrl_replicate_3_root_acetyl_abs.352000000a595b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVY3KBCXY_l02n02_input_ctrl_replicate_3_root_acetyl_abs.352000000a595b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19186997
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTGTA59150.06.200338445
AGAGCGT138450.05.96424745
GTCGTGT79650.05.282486445
AAGAGCG168400.05.13064245
TGTAGGG35450.05.077574345
GTGTAGG50650.05.06416645
Produced by FastQC (version 0.11.2)