FastQCFastQC Report
Wed 1 Nov 2017
HVY3KBCXY_l02n02_chip_ctrl_replicate_2_root_h3k27ac.352000000a58ef.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVY3KBCXY_l02n02_chip_ctrl_replicate_2_root_h3k27ac.352000000a58ef.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11870565
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCCGAT21850.09.16475610
CTTCCGA28700.07.52612979
TCCGATC32600.06.69478311
AGAGCGT43350.06.228397445
GTGTGCT39450.06.04562472
CCGATCT35550.06.01265612
GTGCTCT36300.05.70247754
TGTGCTC39500.05.69623
ATCGGAA90000.05.2000245
CGTGTGC40500.05.16666461
GATCGGA110750.05.09934345
TCTTCCG46600.05.0697418
AAGAGCG57150.05.039389645
Produced by FastQC (version 0.11.2)