FastQCFastQC Report
Wed 1 Nov 2017
HVY3KBCXY_l02n01_input_ctrl_replicate_3_root_acetyl_abs.351000000a595e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVY3KBCXY_l02n01_input_ctrl_replicate_3_root_acetyl_abs.351000000a595e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19186997
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA40850.06.279027545
CACGTCT64650.06.16005245
CACACGT81750.05.944914345
ACACGTC74350.05.56822145
ACGTCTG47300.05.56550245
GAGCACA139750.05.34522445
AGAGCAC154450.05.317219345
Produced by FastQC (version 0.11.2)