FastQCFastQC Report
Wed 1 Nov 2017
HVY3KBCXY_l01n02_input_ctrl_replicate_1_shoot_acetyl_abs.352000000a58fc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVY3KBCXY_l01n02_input_ctrl_replicate_1_shoot_acetyl_abs.352000000a58fc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16880445
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCCGA53850.022.7717919
TTCCGAT55050.021.82458110
CCGATCT64800.019.13086912
TCCGATC64950.018.67100511
CGTGTGC70500.017.7432631
GTGCTCT70850.017.4344644
TCTTCCG74050.016.8026378
TGTGCTC74200.016.6168583
GTGTGCT76150.016.5154232
GCTCTTC88550.013.9749496
TGCTCTT95250.013.2045315
CTCTTCC123250.010.4968037
CGATCTA35700.09.70533713
CGATCTG43650.07.679980813
CGATCTC63200.06.7638613
CGATCTT49200.05.670412513
Produced by FastQC (version 0.11.2)