FastQCFastQC Report
Wed 1 Nov 2017
HVY3KBCXY_l01n02_chip_ctrl_replicate_2_shoot_h3k9ac.352000000a58d2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVY3KBCXY_l01n02_chip_ctrl_replicate_2_shoot_h3k9ac.352000000a58d2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16978724
Sequences flagged as poor quality0
Sequence length51
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGGAA114250.08.5469745
AAAGAGT42550.08.40768145
GTAGGGA138150.07.60579645
TGTAGGG162650.07.33162945
GGAAAGA107000.06.834051645
AGGGAAA129050.06.450930645
AAGAGTG35850.06.150573345
CGTGTAG226900.06.09844845
GTGTAGG196900.05.987758645
GGGAAAG117750.05.980839344
TCGTGTA249700.05.730826445
AGAGTGT25900.05.38605345
GAAAGAG94800.05.26894145