FastQCFastQC Report
Wed 1 Nov 2017
HVY3KBCXY_l01n01_chip_ctrl_replicate_2_shoot_h3k9ac.351000000a58d5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVY3KBCXY_l01n01_chip_ctrl_replicate_2_shoot_h3k9ac.351000000a58d5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16978724
Sequences flagged as poor quality0
Sequence length51
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGAACT129500.07.34929645
TCTGAAC145350.07.136101745
GTCTGAA165850.07.0815845
TGAACTC117600.06.88763845
ACTCCAG67900.06.85923645
AACTCCA98400.06.83677445
CTCCAGT55950.06.63527645
GAACTCC109200.06.531482745
CGTCTGA183300.06.40741944
ACGTCTG213600.06.341184645
CACGTCT255150.05.581915445
CACACGT323950.05.118758745
ACACGTC287400.05.01035345