HVWNMBGXB_n01_5G-ABF3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVWNMBGXB_n01_5G-ABF3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2282444
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACGACATCTCGTATGC	10167	0.4454435683854675	TruSeq Adapter, Index 6 (97% over 36bp)
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA	6290	0.27558178864410254	No Hit
CTGTTACTACCCTACACTCATACTTGGATCACAGCCACTAGTAGCCTATG	2936	0.12863404315724725	No Hit
CAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTA	2915	0.12771397677226692	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	2828	0.12390227317734849	No Hit
CCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATA	2487	0.1089621475926682	No Hit
CCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTT	2351	0.10300362243279573	No Hit
GCCGGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAA	2342	0.10260930826780415	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	1155	65.15814	46
CGTATGC	1190	63.53587	44
GTATGCC	1185	63.50857	45
ACGTCTG	1255	60.514805	15
AGTCACG	1275	59.572075	28
TCGTATG	1275	59.30015	43
GCACACG	1285	58.82965	11
CACGTCT	1315	58.019814	14
CTCGTAT	1310	57.979187	42
GCCGTCT	1320	57.010876	49
CATCTCG	1345	56.46796	39
CAGTCAC	1350	56.00447	27
AGCACAC	1355	55.790478	10
CACACGT	1375	55.488045	12
ACGACAT	1380	54.77978	35
GACATCT	1420	53.236687	37
GAGCACA	1425	53.048733	9
GACGACA	1445	52.55784	34
TCCAGTC	1450	52.383488	25
CCAGTCA	1505	50.70172	26