HVV32AFXY_n02_undetermined.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVV32AFXY_n02_undetermined.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29686441
Sequences flagged as poor quality	0
Sequence length	80
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1801894	6.069754201926732	No Hit
ACGATCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAG	698886	2.354226294758607	No Hit
GATCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCT	497228	1.6749330106630163	No Hit
CGATCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGC	495073	1.6676738043472437	No Hit
TCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTGA	179168	0.6035347921968821	No Hit
ATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTGACGC	175525	0.5912631965549525	No Hit
ATCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTT	140787	0.47424681186943224	No Hit
ATCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTA	131569	0.4431955989604817	No Hit
ATCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTG	122833	0.4137680229165901	No Hit
ATCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTC	99337	0.33462077855678285	No Hit
CGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTGAC	82166	0.2767795573743582	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	67771	0.22828940660148517	No Hit
TCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTGACGCT	40725	0.1371838409326332	No Hit
TCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTTG	37458	0.1261788167870982	No Hit
TCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTAT	33107	0.11152229396578726	No Hit
TCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTTT	32388	0.10910031283305399	No Hit
TCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTAA	32065	0.10801227402099162	No Hit
TCGATCCGACTCGGTGCCACTTTTTCAACTAGTTCCGCTTACACAGCTTA	31844	0.1072678264127384	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGATCG	89325	73.18252	1
TAGTGGA	185240	63.770905	74
TAGTGGG	12790	60.472317	74
TAGTGGC	12650	57.221493	74
TCTCGGT	8420	49.400925	74
GATCTCG	29275	49.25221	73
AACTCGA	4540	42.631115	74
CGGGGTT	4730	42.53953	14
ATAGTGG	310130	42.41685	73
CGATCGA	154115	42.249767	2
TAGTAGA	4555	41.840775	74
ATAGTAG	4760	41.51815	73
TAGTCTG	6720	39.81529	74
CGGGTTT	4980	39.587017	14
GGTGTAG	29480	37.532513	67
AGGTGTA	29595	37.4186	66
GAGGTGT	29545	37.373882	65
GAGAGGT	29645	37.31328	63
GGATAGT	34355	37.231335	66
AGAGGTG	29755	37.166958	64