Sample	Filename	File type	Encoding	Total Sequences	Sequences flagged as poor quality	Sequence length	%GC	total_deduplicated_percentage	avg_sequence_length	basic_statistics	per_base_sequence_quality	per_tile_sequence_quality	per_sequence_quality_scores	per_base_sequence_content	per_sequence_gc_content	per_base_n_content	sequence_length_distribution	sequence_duplication_levels	overrepresented_sequences	adapter_content
HVV2HAFX3_n01_2s-NF-Spike-hop1	HVV2HAFX3_n01_2s-NF-Spike-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11594124.0	0.0	151.0	41.0	67.50491615071252	151.0	pass	pass	pass	pass	warn	warn	pass	pass	warn	warn	pass
HVV2HAFX3_n01_2s-NF-Spike-input	HVV2HAFX3_n01_2s-NF-Spike-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11164085.0	0.0	151.0	39.0	65.35353328524278	151.0	pass	pass	pass	pass	warn	pass	pass	pass	warn	warn	pass
HVV2HAFX3_n01_2s1-NF-hop1	HVV2HAFX3_n01_2s1-NF-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11522346.0	0.0	151.0	42.0	67.08290159145601	151.0	pass	pass	pass	pass	warn	warn	pass	pass	warn	fail	warn
HVV2HAFX3_n01_2s1-NF-input	HVV2HAFX3_n01_2s1-NF-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	9133447.0	0.0	151.0	39.0	71.67729692398068	151.0	pass	pass	pass	pass	warn	pass	pass	pass	pass	pass	warn
HVV2HAFX3_n01_9120-spike-chip	HVV2HAFX3_n01_9120-spike-chip.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	7888959.0	0.0	151.0	39.0	66.85453196766467	151.0	pass	pass	pass	pass	warn	pass	pass	pass	warn	fail	pass
HVV2HAFX3_n01_9120-spike-input	HVV2HAFX3_n01_9120-spike-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	7792916.0	0.0	151.0	38.0	71.77002382150692	151.0	pass	pass	pass	pass	warn	pass	pass	pass	pass	warn	pass
HVV2HAFX3_n01_Dan	HVV2HAFX3_n01_Dan.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	5849874.0	0.0	151.0	37.0	61.742404099203476	151.0	pass	pass	pass	pass	fail	pass	pass	pass	warn	pass	warn
HVV2HAFX3_n01_Wt-NF-Spike-hop1	HVV2HAFX3_n01_Wt-NF-Spike-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	8490965.0	0.0	151.0	40.0	69.33518299536267	151.0	pass	pass	pass	pass	warn	pass	pass	pass	warn	pass	warn
HVV2HAFX3_n01_Wt-NF-Spike-input	HVV2HAFX3_n01_Wt-NF-Spike-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11011952.0	0.0	151.0	40.0	67.46028055194779	151.0	pass	pass	pass	pass	pass	warn	pass	pass	warn	warn	warn
HVV2HAFX3_n01_Wt-NF-hop1	HVV2HAFX3_n01_Wt-NF-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11713278.0	0.0	151.0	40.0	59.09395599356613	151.0	pass	pass	pass	pass	fail	pass	pass	pass	warn	warn	pass
HVV2HAFX3_n01_Wt-NF-input	HVV2HAFX3_n01_Wt-NF-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11511636.0	0.0	151.0	39.0	64.5408540818759	151.0	pass	pass	pass	pass	warn	pass	pass	pass	warn	pass	pass
HVV2HAFX3_n01_nov2022_11644-Spk-hop1	HVV2HAFX3_n01_nov2022_11644-Spk-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	17956076.0	0.0	151.0	40.0	54.44154792894664	151.0	pass	pass	pass	pass	pass	warn	pass	pass	warn	fail	pass
HVV2HAFX3_n01_nov2022_11644-Spk-in	HVV2HAFX3_n01_nov2022_11644-Spk-in.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	850743.0	0.0	151.0	37.0	85.34556196560463	151.0	pass	pass	pass	pass	pass	fail	pass	pass	pass	warn	pass
HVV2HAFX3_n01_nov2022_7797-Spk-hop1	HVV2HAFX3_n01_nov2022_7797-Spk-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	10965048.0	0.0	151.0	40.0	62.52427930301814	151.0	pass	pass	pass	pass	pass	warn	pass	pass	warn	warn	pass
HVV2HAFX3_n01_nov2022_7797-Spk-in	HVV2HAFX3_n01_nov2022_7797-Spk-in.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	16026888.0	0.0	151.0	40.0	60.07226750551623	151.0	pass	pass	pass	pass	pass	warn	pass	pass	warn	fail	pass
HVV2HAFX3_n01_undetermined	HVV2HAFX3_n01_undetermined.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	5518975.0	0.0	151.0	42.0	40.046874474750005	151.0	pass	pass	pass	pass	pass	warn	pass	pass	fail	pass	pass
HVV2HAFX3_n02_2s-NF-Spike-hop1	HVV2HAFX3_n02_2s-NF-Spike-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11594124.0	0.0	151.0	42.0	67.98577968409435	151.0	pass	pass	pass	pass	warn	warn	pass	pass	warn	warn	pass
HVV2HAFX3_n02_2s-NF-Spike-input	HVV2HAFX3_n02_2s-NF-Spike-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11164085.0	0.0	151.0	39.0	67.05168076872853	151.0	pass	pass	pass	pass	fail	warn	pass	pass	warn	warn	pass
HVV2HAFX3_n02_2s1-NF-hop1	HVV2HAFX3_n02_2s1-NF-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11522346.0	0.0	151.0	43.0	67.65438539560971	151.0	pass	pass	pass	pass	warn	fail	pass	pass	warn	fail	warn
HVV2HAFX3_n02_2s1-NF-input	HVV2HAFX3_n02_2s1-NF-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	9133447.0	0.0	151.0	40.0	73.03891730734821	151.0	pass	pass	pass	pass	fail	fail	pass	pass	pass	fail	warn
HVV2HAFX3_n02_9120-spike-chip	HVV2HAFX3_n02_9120-spike-chip.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	7888959.0	0.0	151.0	40.0	68.67416103853166	151.0	pass	pass	pass	pass	fail	fail	pass	pass	warn	fail	pass
HVV2HAFX3_n02_9120-spike-input	HVV2HAFX3_n02_9120-spike-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	7792916.0	0.0	151.0	38.0	73.53003177158939	151.0	pass	pass	pass	pass	fail	warn	pass	pass	pass	warn	pass
HVV2HAFX3_n02_Dan	HVV2HAFX3_n02_Dan.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	5849874.0	0.0	151.0	37.0	63.74585976988738	151.0	pass	pass	pass	pass	warn	pass	pass	pass	warn	pass	warn
HVV2HAFX3_n02_Wt-NF-Spike-hop1	HVV2HAFX3_n02_Wt-NF-Spike-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	8490965.0	0.0	151.0	40.0	70.75235808733984	151.0	pass	pass	pass	pass	warn	pass	pass	pass	pass	warn	warn
HVV2HAFX3_n02_Wt-NF-Spike-input	HVV2HAFX3_n02_Wt-NF-Spike-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11011952.0	0.0	151.0	41.0	69.08768098614304	151.0	pass	pass	pass	pass	fail	fail	pass	pass	warn	fail	warn
HVV2HAFX3_n02_Wt-NF-hop1	HVV2HAFX3_n02_Wt-NF-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11713278.0	0.0	151.0	40.0	61.19623939579686	151.0	pass	pass	pass	pass	fail	warn	pass	pass	warn	warn	pass
HVV2HAFX3_n02_Wt-NF-input	HVV2HAFX3_n02_Wt-NF-input.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	11511636.0	0.0	151.0	39.0	66.63839843280965	151.0	pass	pass	pass	pass	fail	warn	pass	pass	warn	warn	pass
HVV2HAFX3_n02_nov2022_11644-Spk-hop1	HVV2HAFX3_n02_nov2022_11644-Spk-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	17956076.0	0.0	151.0	44.0	56.98501599549367	151.0	pass	pass	pass	pass	warn	fail	pass	pass	warn	fail	pass
HVV2HAFX3_n02_nov2022_11644-Spk-in	HVV2HAFX3_n02_nov2022_11644-Spk-in.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	850743.0	0.0	151.0	41.0	80.9154592661693	151.0	pass	pass	pass	pass	warn	fail	pass	pass	pass	fail	pass
HVV2HAFX3_n02_nov2022_7797-Spk-hop1	HVV2HAFX3_n02_nov2022_7797-Spk-hop1.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	10965048.0	0.0	151.0	43.0	64.42786885489623	151.0	pass	pass	pass	pass	warn	fail	pass	pass	warn	fail	pass
HVV2HAFX3_n02_nov2022_7797-Spk-in	HVV2HAFX3_n02_nov2022_7797-Spk-in.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	16026888.0	0.0	151.0	45.0	60.16868380214816	151.0	pass	pass	pass	pass	warn	fail	pass	pass	warn	fail	pass
HVV2HAFX3_n02_undetermined	HVV2HAFX3_n02_undetermined.fastq.gz	Conventional base calls	Sanger / Illumina 1.9	5518975.0	0.0	151.0	45.0	38.31683321188834	151.0	pass	pass	pass	pass	pass	fail	pass	pass	fail	fail	pass