[2021-11-25 05:09:20,957] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-11-25 05:09:20,957] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-11-25 05:09:20,957] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-11-25 05:09:20,958] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-11-25 05:09:20,958] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-11-25 05:09:20,958] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVTN5DSX2/4 [2021-11-25 05:09:22,545] multiqc [WARNING] MultiQC Version v1.11 now available! [2021-11-25 05:09:22,546] multiqc [INFO ] This is MultiQC v1.9 [2021-11-25 05:09:22,546] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVTN5DSX2/4 [2021-11-25 05:09:22,546] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HVTN5DSX2/4 [2021-11-25 05:09:22,546] multiqc [INFO ] Template : default [2021-11-25 05:09:22,546] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-11-25 05:09:22,546] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HVTN5DSX2/4 [2021-11-25 05:09:22,546] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-11-25 05:09:22,546] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-12399895/tmpq0i8i19n [2021-11-25 05:09:22,646] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:22,649] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:22,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L2c_fastqc.html [2021-11-25 05:09:22,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L2c_fastqc.html [2021-11-25 05:09:22,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_HTO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:22,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_HTO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:22,846] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 05:09:22,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 05:09:22,848] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 05:09:22,848] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 05:09:22,848] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 05:09:22,848] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 05:09:22,848] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 05:09:23,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CPAcore_K562-L2_fastqc.html [2021-11-25 05:09:23,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CPAcore_K562-L2_fastqc.html [2021-11-25 05:09:23,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L2t_fastqc.html [2021-11-25 05:09:23,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L2t_fastqc.html [2021-11-25 05:09:23,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_undetermined_fastqc.html [2021-11-25 05:09:23,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_undetermined_fastqc.html [2021-11-25 05:09:23,774] multiqc [DEBUG ] File ignored by hicexplorer 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HVTN5DSX2_l04_n02_ADT-CaRPool_PDL1-L2_fastqc.html [2021-11-25 05:09:24,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_ADT-CaRPool_PDL1-L2_fastqc.html [2021-11-25 05:09:24,300] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L2a_fastqc.html [2021-11-25 05:09:24,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L2a_fastqc.html [2021-11-25 05:09:24,356] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GDO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:24,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GDO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:24,359] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GDO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:24,359] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GDO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:24,359] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GDO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:24,359] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GDO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:24,359] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GDO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:24,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GDO-CPAcore_K562-L2_fastqc.html [2021-11-25 05:09:24,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GDO-CPAcore_K562-L2_fastqc.html [2021-11-25 05:09:24,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L1a_fastqc.html [2021-11-25 05:09:24,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L1a_fastqc.html [2021-11-25 05:09:24,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_undetermined_fastqc.html [2021-11-25 05:09:24,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_undetermined_fastqc.html [2021-11-25 05:09:24,616] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_HTO-CPAcore_K562-L2_fastqc.html [2021-11-25 05:09:24,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_HTO-CPAcore_K562-L2_fastqc.html [2021-11-25 05:09:24,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L2a_fastqc.html [2021-11-25 05:09:24,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L2a_fastqc.html [2021-11-25 05:09:24,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CPAcore_HAP1K562-L1_fastqc.html [2021-11-25 05:09:24,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CPAcore_HAP1K562-L1_fastqc.html [2021-11-25 05:09:24,777] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_ADT-CaRPool_PDL1-L1_fastqc.html [2021-11-25 05:09:24,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_ADT-CaRPool_PDL1-L1_fastqc.html [2021-11-25 05:09:24,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L1t_fastqc.html [2021-11-25 05:09:24,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L1t_fastqc.html [2021-11-25 05:09:24,902] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L1a_fastqc.html [2021-11-25 05:09:24,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L1a_fastqc.html [2021-11-25 05:09:24,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L2t_fastqc.html [2021-11-25 05:09:24,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L2t_fastqc.html [2021-11-25 05:09:25,006] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CPAcore_HAP1K562-L2_fastqc.html [2021-11-25 05:09:25,008] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CPAcore_HAP1K562-L2_fastqc.html [2021-11-25 05:09:25,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_HTO-CPAcore_K562-L2_fastqc.html [2021-11-25 05:09:25,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_HTO-CPAcore_K562-L2_fastqc.html [2021-11-25 05:09:25,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L1t_fastqc.html [2021-11-25 05:09:25,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L1t_fastqc.html [2021-11-25 05:09:25,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L1g_fastqc.html [2021-11-25 05:09:25,193] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L1g_fastqc.html [2021-11-25 05:09:25,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_ADT-CaRPool_PDL1-L2_fastqc.html [2021-11-25 05:09:25,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_ADT-CaRPool_PDL1-L2_fastqc.html [2021-11-25 05:09:25,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_HTO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:25,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_HTO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:25,396] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L1c_fastqc.html [2021-11-25 05:09:25,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L1c_fastqc.html [2021-11-25 05:09:25,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L2c_fastqc.html [2021-11-25 05:09:25,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CaRPool_PDL1-L2c_fastqc.html [2021-11-25 05:09:25,498] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:25,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GEX-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:25,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GDO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:25,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n01_GDO-CPAcore_K562-L1_fastqc.html [2021-11-25 05:09:25,623] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L2g_fastqc.html [2021-11-25 05:09:25,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l04_n02_GEX-CaRPool_PDL1-L2g_fastqc.html [2021-11-25 05:09:25,986] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-11-25 05:09:25,987] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-11-25 05:09:26,003] multiqc.modules.custom_content.custom_content [INFO ] demux_report-4: Found 19 samples (table) [2021-11-25 05:09:26,013] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-11-25 05:09:26,015] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-11-25 05:09:26,018] multiqc [DEBUG ] No samples found: conpair [2021-11-25 05:09:26,022] multiqc [DEBUG ] No samples found: peddy [2021-11-25 05:09:26,025] multiqc [DEBUG ] No samples found: somalier [2021-11-25 05:09:26,028] multiqc [DEBUG ] No samples found: methylQA [2021-11-25 05:09:26,032] multiqc [DEBUG ] No samples found: mosdepth [2021-11-25 05:09:26,035] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-11-25 05:09:26,038] multiqc [DEBUG ] No samples found: qualimap [2021-11-25 05:09:26,041] multiqc [DEBUG ] No samples found: preseq [2021-11-25 05:09:26,044] multiqc [DEBUG ] No samples found: quast [2021-11-25 05:09:26,047] multiqc [DEBUG ] No samples found: qorts [2021-11-25 05:09:26,051] multiqc [DEBUG ] No samples found: rna_seqc [2021-11-25 05:09:26,054] multiqc [DEBUG ] No samples found: rockhopper [2021-11-25 05:09:26,057] multiqc [DEBUG ] No samples found: rsem [2021-11-25 05:09:26,062] multiqc [DEBUG ] No samples found: rseqc [2021-11-25 05:09:26,065] multiqc [DEBUG ] No samples found: busco [2021-11-25 05:09:26,068] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-11-25 05:09:26,071] multiqc [DEBUG ] No samples found: disambiguate [2021-11-25 05:09:26,074] multiqc [DEBUG ] No samples found: supernova [2021-11-25 05:09:26,079] multiqc [DEBUG ] No samples found: deeptools [2021-11-25 05:09:26,083] multiqc [DEBUG ] No samples found: sargasso [2021-11-25 05:09:26,086] multiqc [DEBUG ] No samples found: verifybamid [2021-11-25 05:09:26,089] multiqc [DEBUG ] No samples found: mirtrace [2021-11-25 05:09:26,092] multiqc [DEBUG ] No samples found: happy [2021-11-25 05:09:26,095] multiqc [DEBUG ] No samples found: mirtop [2021-11-25 05:09:26,099] multiqc [DEBUG ] No samples found: homer [2021-11-25 05:09:26,102] multiqc [DEBUG ] No samples found: macs2 [2021-11-25 05:09:26,105] multiqc [DEBUG ] No samples found: theta2 [2021-11-25 05:09:26,108] multiqc [DEBUG ] No samples found: snpeff [2021-11-25 05:09:26,112] multiqc [DEBUG ] No samples found: gatk [2021-11-25 05:09:26,115] multiqc [DEBUG ] No samples found: htseq [2021-11-25 05:09:26,118] multiqc [DEBUG ] No samples found: bcftools [2021-11-25 05:09:26,121] multiqc [DEBUG ] No samples found: featureCounts [2021-11-25 05:09:26,124] multiqc [DEBUG ] No samples found: fgbio [2021-11-25 05:09:26,130] multiqc [DEBUG ] No samples found: dragen [2021-11-25 05:09:26,134] multiqc [DEBUG ] No samples found: dedup [2021-11-25 05:09:26,137] multiqc [DEBUG ] No samples found: damageprofiler [2021-11-25 05:09:26,146] multiqc [DEBUG ] No samples found: biobambam2 [2021-11-25 05:09:26,149] multiqc [DEBUG ] No samples found: mtnucratio [2021-11-25 05:09:26,151] multiqc [DEBUG ] No samples found: picard [2021-11-25 05:09:26,154] multiqc [DEBUG ] No samples found: prokka [2021-11-25 05:09:26,157] multiqc [DEBUG ] No samples found: samblaster [2021-11-25 05:09:26,162] multiqc [DEBUG ] No samples found: samtools [2021-11-25 05:09:26,165] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-11-25 05:09:26,168] multiqc [DEBUG ] No samples found: bamtools [2021-11-25 05:09:26,171] multiqc [DEBUG ] No samples found: jellyfish [2021-11-25 05:09:26,175] multiqc [DEBUG ] No samples found: vcftools [2021-11-25 05:09:26,178] multiqc [DEBUG ] No samples found: longranger [2021-11-25 05:09:26,181] multiqc [DEBUG ] No samples found: stacks [2021-11-25 05:09:26,184] multiqc [DEBUG ] No samples found: varscan2 [2021-11-25 05:09:26,190] multiqc [DEBUG ] No samples found: bbmap [2021-11-25 05:09:26,193] multiqc [DEBUG ] No samples found: bismark [2021-11-25 05:09:26,197] multiqc [DEBUG ] No samples found: biscuit [2021-11-25 05:09:26,200] multiqc [DEBUG ] No samples found: hicexplorer [2021-11-25 05:09:26,203] multiqc [DEBUG ] No samples found: hicup [2021-11-25 05:09:26,206] multiqc [DEBUG ] No samples found: hicpro [2021-11-25 05:09:26,209] multiqc [DEBUG ] No samples found: salmon [2021-11-25 05:09:26,212] multiqc [DEBUG ] No samples found: kallisto [2021-11-25 05:09:26,215] multiqc [DEBUG ] No samples found: slamdunk [2021-11-25 05:09:26,218] multiqc [DEBUG ] No samples found: star [2021-11-25 05:09:26,221] multiqc [DEBUG ] No samples found: hisat2 [2021-11-25 05:09:26,224] multiqc [DEBUG ] No samples found: tophat [2021-11-25 05:09:26,227] multiqc [DEBUG ] No samples found: bowtie2 [2021-11-25 05:09:26,230] multiqc [DEBUG ] No samples found: bowtie1 [2021-11-25 05:09:26,233] multiqc [DEBUG ] No samples found: snpsplit [2021-11-25 05:09:26,236] multiqc [DEBUG ] No samples found: kat [2021-11-25 05:09:26,239] multiqc [DEBUG ] No samples found: leehom [2021-11-25 05:09:26,243] multiqc [DEBUG ] No samples found: adapterRemoval [2021-11-25 05:09:26,245] multiqc [DEBUG ] No samples found: clipandmerge [2021-11-25 05:09:26,250] multiqc [DEBUG ] No samples found: cutadapt [2021-11-25 05:09:26,255] multiqc [DEBUG ] No samples found: flexbar [2021-11-25 05:09:26,258] multiqc [DEBUG ] No samples found: kaiju [2021-11-25 05:09:26,261] multiqc [DEBUG ] No samples found: kraken [2021-11-25 05:09:26,264] multiqc [DEBUG ] No samples found: malt [2021-11-25 05:09:26,267] multiqc [DEBUG ] No samples found: trimmomatic [2021-11-25 05:09:26,270] multiqc [DEBUG ] No samples found: sickle [2021-11-25 05:09:26,273] multiqc [DEBUG ] No samples found: skewer [2021-11-25 05:09:26,276] multiqc [DEBUG ] No samples found: sortmerna [2021-11-25 05:09:26,279] multiqc [DEBUG ] No samples found: biobloomtools [2021-11-25 05:09:26,282] multiqc [DEBUG ] No samples found: fastq_screen [2021-11-25 05:09:26,285] multiqc [DEBUG ] No samples found: afterqc [2021-11-25 05:09:26,288] multiqc [DEBUG ] No samples found: fastp [2021-11-25 05:09:34,202] multiqc.modules.fastqc.fastqc [INFO ] Found 38 reports [2021-11-25 05:09:34,705] multiqc [DEBUG ] No samples found: pycoqc [2021-11-25 05:09:34,709] multiqc [DEBUG ] No samples found: minionqc [2021-11-25 05:09:34,712] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-11-25 05:09:34,715] multiqc [DEBUG ] No samples found: clusterflow [2021-11-25 05:09:34,719] multiqc [DEBUG ] No samples found: bcl2fastq [2021-11-25 05:09:34,722] multiqc [DEBUG ] No samples found: interop [2021-11-25 05:09:34,725] multiqc [DEBUG ] No samples found: ivar [2021-11-25 05:09:34,728] multiqc [DEBUG ] No samples found: flash [2021-11-25 05:09:34,732] multiqc [DEBUG ] No samples found: seqyclean [2021-11-25 05:09:34,732] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2021-11-25 05:09:34,732] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 4 Demultiplexing Report'. [2021-11-25 05:09:34,732] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-11-25 05:09:34,732] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2021-11-25 05:09:34,732] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-11-25 05:09:34,777] multiqc [INFO ] Compressing plot data [2021-11-25 05:09:35,481] multiqc [INFO ] Report : multiqc_report.html [2021-11-25 05:09:35,481] multiqc [INFO ] Data : multiqc_data [2021-11-25 05:09:35,481] multiqc [DEBUG ] Moving data file from '/state/partition1/job-12399895/tmpq0i8i19n/multiqc_data' to '/scratch/gencore/logs/html/HVTN5DSX2/4/multiqc_data' [2021-11-25 05:09:35,583] multiqc [INFO ] MultiQC complete