Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L1 HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L1.fastq.gz Conventional base calls Sanger / Illumina 1.9 308509080.0 0.0 101.0 35.0 97.5564138250824 101.0 pass fail fail pass fail pass pass pass pass pass warn HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L2 HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L2.fastq.gz Conventional base calls Sanger / Illumina 1.9 376770699.0 0.0 101.0 36.0 99.04081701695573 101.0 pass fail fail pass fail pass pass pass pass pass warn HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L3 HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L3.fastq.gz Conventional base calls Sanger / Illumina 1.9 332821727.0 0.0 101.0 35.0 98.77469451985628 101.0 pass fail fail pass fail pass pass pass pass pass warn HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L4 HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L4.fastq.gz Conventional base calls Sanger / Illumina 1.9 322679446.0 0.0 101.0 35.0 98.09404048036872 101.0 pass fail fail pass fail pass pass pass pass pass warn HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L1 HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L1.fastq.gz Conventional base calls Sanger / Illumina 1.9 89289530.0 0.0 101.0 52.0 55.14760209003469 101.0 pass warn fail pass fail warn pass pass warn pass fail HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L2 HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L2.fastq.gz Conventional base calls Sanger / Illumina 1.9 95173669.0 0.0 101.0 53.0 60.40063512730078 101.0 pass warn fail pass fail fail pass pass warn pass fail HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L3 HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L3.fastq.gz Conventional base calls Sanger / Illumina 1.9 42490743.0 0.0 101.0 51.0 77.94550419032919 101.0 pass warn fail pass fail warn pass pass pass pass fail HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L4 HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L4.fastq.gz Conventional base calls Sanger / Illumina 1.9 92377531.0 0.0 101.0 50.0 59.459760561668965 101.0 pass warn fail pass fail warn pass pass warn pass fail HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L1 HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L1.fastq.gz Conventional base calls Sanger / Illumina 1.9 228916153.0 0.0 101.0 33.0 99.93867857814728 101.0 pass fail fail pass fail warn pass pass pass pass pass HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L2 HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L2.fastq.gz Conventional base calls Sanger / Illumina 1.9 228204371.0 0.0 101.0 33.0 99.93933914575905 101.0 pass fail fail pass fail pass pass pass pass pass pass HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L3 HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L3.fastq.gz Conventional base calls Sanger / Illumina 1.9 223385760.0 0.0 101.0 34.0 99.90486939740042 101.0 pass fail fail pass fail pass pass pass pass pass pass HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L4 HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L4.fastq.gz Conventional base calls Sanger / Illumina 1.9 266997065.0 0.0 101.0 34.0 99.95123314704578 101.0 pass fail fail pass fail pass pass pass pass pass pass HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L1 HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L1.fastq.gz Conventional base calls Sanger / Illumina 1.9 49632934.0 0.0 101.0 35.0 98.16077772515803 101.0 pass fail fail warn fail pass pass pass pass pass warn HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L2 HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L2.fastq.gz Conventional base calls Sanger / Illumina 1.9 47359887.0 0.0 101.0 35.0 98.84395309728181 101.0 pass fail fail warn fail pass pass pass pass pass pass HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L3 HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L3.fastq.gz Conventional base calls Sanger / Illumina 1.9 45643144.0 0.0 101.0 35.0 98.58493085195678 101.0 pass fail fail warn fail pass pass pass pass pass warn HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L4 HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L4.fastq.gz Conventional base calls Sanger / Illumina 1.9 54042422.0 0.0 101.0 35.0 98.76530864711057 101.0 pass fail fail warn fail pass pass pass pass pass pass HVTN5DSX2_l02_n01_undetermined HVTN5DSX2_l02_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 90436455.0 0.0 101.0 38.0 93.80552312715477 101.0 pass fail fail warn fail fail pass pass pass pass warn HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L1 HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L1.fastq.gz Conventional base calls Sanger / Illumina 1.9 308509080.0 0.0 101.0 26.0 8.247198659496684 101.0 pass fail fail pass fail warn pass pass fail fail pass HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L2 HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L2.fastq.gz Conventional base calls Sanger / Illumina 1.9 376770699.0 0.0 101.0 26.0 7.41820043721871 101.0 pass fail fail pass fail warn pass pass fail fail pass HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L3 HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L3.fastq.gz Conventional base calls Sanger / Illumina 1.9 332821727.0 0.0 101.0 27.0 9.480234311711934 101.0 pass fail fail pass fail pass pass pass fail fail pass HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L4 HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L4.fastq.gz Conventional base calls Sanger / Illumina 1.9 322679446.0 0.0 101.0 27.0 9.28625321231163 101.0 pass fail fail pass fail pass pass pass fail fail pass HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L1 HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L1.fastq.gz Conventional base calls Sanger / Illumina 1.9 89289530.0 0.0 101.0 50.0 7.902876871381799 101.0 pass pass warn pass fail fail pass pass fail pass fail HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L2 HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L2.fastq.gz Conventional base calls Sanger / Illumina 1.9 95173669.0 0.0 101.0 49.0 7.835167950102958 101.0 pass pass warn pass fail fail pass pass fail warn fail HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L3 HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L3.fastq.gz Conventional base calls Sanger / Illumina 1.9 42490743.0 0.0 101.0 50.0 12.13722227703408 101.0 pass pass warn pass fail fail pass pass fail warn fail HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L4 HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L4.fastq.gz Conventional base calls Sanger / Illumina 1.9 92377531.0 0.0 101.0 50.0 8.449048999528095 101.0 pass pass warn pass fail fail pass pass fail pass fail HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L1 HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L1.fastq.gz Conventional base calls Sanger / Illumina 1.9 228916153.0 0.0 101.0 46.0 36.580690038556675 101.0 pass pass fail pass warn warn pass pass fail warn pass HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L2 HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L2.fastq.gz Conventional base calls Sanger / Illumina 1.9 228204371.0 0.0 101.0 46.0 38.658415623187096 101.0 pass pass fail pass warn pass pass pass fail warn pass HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L3 HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L3.fastq.gz Conventional base calls Sanger / Illumina 1.9 223385760.0 0.0 101.0 46.0 38.55709205708619 101.0 pass pass fail pass warn pass pass pass fail warn pass HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L4 HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L4.fastq.gz Conventional base calls Sanger / Illumina 1.9 266997065.0 0.0 101.0 46.0 38.496740362142916 101.0 pass pass fail pass warn pass pass pass fail warn pass HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L1 HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L1.fastq.gz Conventional base calls Sanger / Illumina 1.9 49632934.0 0.0 101.0 30.0 37.39063439290881 101.0 pass fail fail pass fail fail pass pass fail fail pass HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L2 HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L2.fastq.gz Conventional base calls Sanger / Illumina 1.9 47359887.0 0.0 101.0 29.0 36.92985210571662 101.0 pass fail fail pass fail fail pass pass fail fail pass HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L3 HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L3.fastq.gz Conventional base calls Sanger / Illumina 1.9 45643144.0 0.0 101.0 29.0 39.41139492074751 101.0 pass fail fail pass fail fail pass pass fail fail pass HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L4 HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L4.fastq.gz Conventional base calls Sanger / Illumina 1.9 54042422.0 0.0 101.0 29.0 37.72093192096288 101.0 pass fail fail pass fail fail pass pass fail fail pass HVTN5DSX2_l02_n02_undetermined HVTN5DSX2_l02_n02_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 90436455.0 0.0 101.0 46.0 31.075392439960364 101.0 pass pass warn pass fail fail pass pass fail fail pass