[2021-11-25 02:55:05,543] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-11-25 02:55:05,543] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-11-25 02:55:05,543] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-11-25 02:55:05,544] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-11-25 02:55:05,544] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-11-25 02:55:05,544] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVTN5DSX2/2 [2021-11-25 02:55:07,071] multiqc [WARNING] MultiQC Version v1.11 now available! [2021-11-25 02:55:07,071] multiqc [INFO ] This is MultiQC v1.9 [2021-11-25 02:55:07,071] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVTN5DSX2/2 [2021-11-25 02:55:07,071] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HVTN5DSX2/2 [2021-11-25 02:55:07,071] multiqc [INFO ] Template : default [2021-11-25 02:55:07,071] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-11-25 02:55:07,071] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HVTN5DSX2/2 [2021-11-25 02:55:07,072] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-11-25 02:55:07,072] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-12399895/tmpb31o6kub [2021-11-25 02:55:07,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:07,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:07,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:07,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:07,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:07,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:07,344] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 02:55:07,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 02:55:07,346] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 02:55:07,346] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 02:55:07,346] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 02:55:07,346] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 02:55:07,346] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 02:55:08,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:08,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:08,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:08,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:08,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:08,193] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:08,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:08,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:08,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:08,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:08,414] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:08,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:08,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:08,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:08,603] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,731] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:08,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:08,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:08,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:08,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:08,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:08,921] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_HTO-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:08,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:08,983] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:09,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:09,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:09,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_undetermined_fastqc.html [2021-11-25 02:55:09,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_undetermined_fastqc.html [2021-11-25 02:55:09,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:09,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:09,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:09,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:09,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:09,275] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:09,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_undetermined_fastqc.html [2021-11-25 02:55:09,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_undetermined_fastqc.html [2021-11-25 02:55:09,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:09,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:09,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:09,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_ADT-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:09,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:09,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:09,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:09,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_ADT-CaRPool_THP1-L3_fastqc.html [2021-11-25 02:55:09,623] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:09,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GEX-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:09,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:09,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_HTO-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:09,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:09,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n02_GDO-CaRPool_THP1-L4_fastqc.html [2021-11-25 02:55:09,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:09,788] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GDO-CaRPool_THP1-L2_fastqc.html [2021-11-25 02:55:09,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:09,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l02_n01_GEX-CaRPool_THP1-L1_fastqc.html [2021-11-25 02:55:10,194] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-11-25 02:55:10,194] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-11-25 02:55:10,202] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-11-25 02:55:10,213] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-11-25 02:55:10,222] multiqc.modules.custom_content.custom_content [INFO ] demux_report-2: Found 17 samples (table) [2021-11-25 02:55:10,225] multiqc [DEBUG ] No samples found: conpair [2021-11-25 02:55:10,229] multiqc [DEBUG ] No samples found: peddy [2021-11-25 02:55:10,232] multiqc [DEBUG ] No samples found: somalier [2021-11-25 02:55:10,235] multiqc [DEBUG ] No samples found: methylQA [2021-11-25 02:55:10,239] multiqc [DEBUG ] No samples found: mosdepth [2021-11-25 02:55:10,243] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-11-25 02:55:10,245] multiqc [DEBUG ] No samples found: qualimap [2021-11-25 02:55:10,248] multiqc [DEBUG ] No samples found: preseq [2021-11-25 02:55:10,252] multiqc [DEBUG ] No samples found: quast [2021-11-25 02:55:10,255] multiqc [DEBUG ] No samples found: qorts [2021-11-25 02:55:10,258] multiqc [DEBUG ] No samples found: rna_seqc [2021-11-25 02:55:10,261] multiqc [DEBUG ] No samples found: rockhopper [2021-11-25 02:55:10,264] multiqc [DEBUG ] No samples found: rsem [2021-11-25 02:55:10,269] multiqc [DEBUG ] No samples found: rseqc [2021-11-25 02:55:10,272] multiqc [DEBUG ] No samples found: busco [2021-11-25 02:55:10,275] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-11-25 02:55:10,278] multiqc [DEBUG ] No samples found: disambiguate [2021-11-25 02:55:10,282] multiqc [DEBUG ] No samples found: supernova [2021-11-25 02:55:10,287] multiqc [DEBUG ] No samples found: deeptools [2021-11-25 02:55:10,290] multiqc [DEBUG ] No samples found: sargasso [2021-11-25 02:55:10,293] multiqc [DEBUG ] No samples found: verifybamid [2021-11-25 02:55:10,296] multiqc [DEBUG ] No samples found: mirtrace [2021-11-25 02:55:10,300] multiqc [DEBUG ] No samples found: happy [2021-11-25 02:55:10,303] multiqc [DEBUG ] No samples found: mirtop [2021-11-25 02:55:10,306] multiqc [DEBUG ] No samples found: homer [2021-11-25 02:55:10,310] multiqc [DEBUG ] No samples found: macs2 [2021-11-25 02:55:10,313] multiqc [DEBUG ] No samples found: theta2 [2021-11-25 02:55:10,316] multiqc [DEBUG ] No samples found: snpeff [2021-11-25 02:55:10,319] multiqc [DEBUG ] No samples found: gatk [2021-11-25 02:55:10,322] multiqc [DEBUG ] No samples found: htseq [2021-11-25 02:55:10,326] multiqc [DEBUG ] No samples found: bcftools [2021-11-25 02:55:10,329] multiqc [DEBUG ] No samples found: featureCounts [2021-11-25 02:55:10,332] multiqc [DEBUG ] No samples found: fgbio [2021-11-25 02:55:10,338] multiqc [DEBUG ] No samples found: dragen [2021-11-25 02:55:10,341] multiqc [DEBUG ] No samples found: dedup [2021-11-25 02:55:10,344] multiqc [DEBUG ] No samples found: damageprofiler [2021-11-25 02:55:10,352] multiqc [DEBUG ] No samples found: biobambam2 [2021-11-25 02:55:10,356] multiqc [DEBUG ] No samples found: mtnucratio [2021-11-25 02:55:10,359] multiqc [DEBUG ] No samples found: picard [2021-11-25 02:55:10,362] multiqc [DEBUG ] No samples found: prokka [2021-11-25 02:55:10,365] multiqc [DEBUG ] No samples found: samblaster [2021-11-25 02:55:10,369] multiqc [DEBUG ] No samples found: samtools [2021-11-25 02:55:10,373] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-11-25 02:55:10,376] multiqc [DEBUG ] No samples found: bamtools [2021-11-25 02:55:10,379] multiqc [DEBUG ] No samples found: jellyfish [2021-11-25 02:55:10,383] multiqc [DEBUG ] No samples found: vcftools [2021-11-25 02:55:10,386] multiqc [DEBUG ] No samples found: longranger [2021-11-25 02:55:10,389] multiqc [DEBUG ] No samples found: stacks [2021-11-25 02:55:10,392] multiqc [DEBUG ] No samples found: varscan2 [2021-11-25 02:55:10,398] multiqc [DEBUG ] No samples found: bbmap [2021-11-25 02:55:10,401] multiqc [DEBUG ] No samples found: bismark [2021-11-25 02:55:10,405] multiqc [DEBUG ] No samples found: biscuit [2021-11-25 02:55:10,408] multiqc [DEBUG ] No samples found: hicexplorer [2021-11-25 02:55:10,411] multiqc [DEBUG ] No samples found: hicup [2021-11-25 02:55:10,414] multiqc [DEBUG ] No samples found: hicpro [2021-11-25 02:55:10,417] multiqc [DEBUG ] No samples found: salmon [2021-11-25 02:55:10,420] multiqc [DEBUG ] No samples found: kallisto [2021-11-25 02:55:10,423] multiqc [DEBUG ] No samples found: slamdunk [2021-11-25 02:55:10,426] multiqc [DEBUG ] No samples found: star [2021-11-25 02:55:10,430] multiqc [DEBUG ] No samples found: hisat2 [2021-11-25 02:55:10,433] multiqc [DEBUG ] No samples found: tophat [2021-11-25 02:55:10,436] multiqc [DEBUG ] No samples found: bowtie2 [2021-11-25 02:55:10,439] multiqc [DEBUG ] No samples found: bowtie1 [2021-11-25 02:55:10,442] multiqc [DEBUG ] No samples found: snpsplit [2021-11-25 02:55:10,445] multiqc [DEBUG ] No samples found: kat [2021-11-25 02:55:10,448] multiqc [DEBUG ] No samples found: leehom [2021-11-25 02:55:10,451] multiqc [DEBUG ] No samples found: adapterRemoval [2021-11-25 02:55:10,454] multiqc [DEBUG ] No samples found: clipandmerge [2021-11-25 02:55:10,457] multiqc [DEBUG ] No samples found: cutadapt [2021-11-25 02:55:10,460] multiqc [DEBUG ] No samples found: flexbar [2021-11-25 02:55:10,463] multiqc [DEBUG ] No samples found: kaiju [2021-11-25 02:55:10,466] multiqc [DEBUG ] No samples found: kraken [2021-11-25 02:55:10,469] multiqc [DEBUG ] No samples found: malt [2021-11-25 02:55:10,472] multiqc [DEBUG ] No samples found: trimmomatic [2021-11-25 02:55:10,475] multiqc [DEBUG ] No samples found: sickle [2021-11-25 02:55:10,478] multiqc [DEBUG ] No samples found: skewer [2021-11-25 02:55:10,481] multiqc [DEBUG ] No samples found: sortmerna [2021-11-25 02:55:10,484] multiqc [DEBUG ] No samples found: biobloomtools [2021-11-25 02:55:10,487] multiqc [DEBUG ] No samples found: fastq_screen [2021-11-25 02:55:10,490] multiqc [DEBUG ] No samples found: afterqc [2021-11-25 02:55:10,494] multiqc [DEBUG ] No samples found: fastp [2021-11-25 02:55:17,709] multiqc.modules.fastqc.fastqc [INFO ] Found 34 reports [2021-11-25 02:55:18,239] multiqc [DEBUG ] No samples found: pycoqc [2021-11-25 02:55:18,242] multiqc [DEBUG ] No samples found: minionqc [2021-11-25 02:55:18,246] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-11-25 02:55:18,249] multiqc [DEBUG ] No samples found: clusterflow [2021-11-25 02:55:18,252] multiqc [DEBUG ] No samples found: bcl2fastq [2021-11-25 02:55:18,255] multiqc [DEBUG ] No samples found: interop [2021-11-25 02:55:18,258] multiqc [DEBUG ] No samples found: ivar [2021-11-25 02:55:18,261] multiqc [DEBUG ] No samples found: flash [2021-11-25 02:55:18,264] multiqc [DEBUG ] No samples found: seqyclean [2021-11-25 02:55:18,264] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2021-11-25 02:55:18,264] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2021-11-25 02:55:18,265] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-11-25 02:55:18,265] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 2 Demultiplexing Report'. [2021-11-25 02:55:18,265] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-11-25 02:55:18,307] multiqc [INFO ] Compressing plot data [2021-11-25 02:55:18,986] multiqc [INFO ] Report : multiqc_report.html [2021-11-25 02:55:18,986] multiqc [INFO ] Data : multiqc_data [2021-11-25 02:55:18,986] multiqc [DEBUG ] Moving data file from '/state/partition1/job-12399895/tmpb31o6kub/multiqc_data' to '/scratch/gencore/logs/html/HVTN5DSX2/2/multiqc_data' [2021-11-25 02:55:19,092] multiqc [INFO ] MultiQC complete