[2021-11-25 01:51:15,122] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-11-25 01:51:15,122] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-11-25 01:51:15,122] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-11-25 01:51:15,123] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-11-25 01:51:15,123] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-11-25 01:51:15,123] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVTN5DSX2/1 [2021-11-25 01:51:16,606] multiqc [WARNING] MultiQC Version v1.11 now available! [2021-11-25 01:51:16,606] multiqc [INFO ] This is MultiQC v1.9 [2021-11-25 01:51:16,606] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVTN5DSX2/1 [2021-11-25 01:51:16,606] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HVTN5DSX2/1 [2021-11-25 01:51:16,606] multiqc [INFO ] Template : default [2021-11-25 01:51:16,606] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-11-25 01:51:16,606] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HVTN5DSX2/1 [2021-11-25 01:51:16,606] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-11-25 01:51:16,607] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-12399895/tmp4dabg0y9 [2021-11-25 01:51:16,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GEX-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:16,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GEX-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:16,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_HTO-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:16,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_HTO-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:16,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_HTO-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:16,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_HTO-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:16,890] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 01:51:16,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 01:51:16,892] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 01:51:16,892] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 01:51:16,892] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 01:51:16,892] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 01:51:16,892] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-11-25 01:51:17,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_ADT-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:17,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_ADT-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:17,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_undetermined_fastqc.html [2021-11-25 01:51:17,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_undetermined_fastqc.html [2021-11-25 01:51:17,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_HTO-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:17,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_HTO-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:17,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GDO-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:17,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GDO-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:17,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GDO-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:17,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GDO-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:17,944] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_ADT-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:17,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_ADT-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:18,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GDO-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GDO-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GEX-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:18,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GEX-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:18,141] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_HTO-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:18,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern 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ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GEX-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:18,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_HTO-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_HTO-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GDO-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:18,434] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GDO-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:18,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GDO-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:18,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GDO-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:18,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GEX-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GEX-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GEX-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:18,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GEX-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:18,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GDO-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:18,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GDO-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:18,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GEX-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GEX-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_HTO-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_HTO-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:18,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_ADT-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:18,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_ADT-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:18,952] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GEX-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:18,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_GEX-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:19,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_HTO-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:19,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_HTO-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:19,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_HTO-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:19,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_HTO-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:19,133] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_undetermined_fastqc.html [2021-11-25 01:51:19,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_undetermined_fastqc.html [2021-11-25 01:51:19,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GEX-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:19,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GEX-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:19,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GDO-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:19,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GDO-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:19,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_ADT-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:19,314] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_ADT-CaRPool_THP1-L4_fastqc.html [2021-11-25 01:51:19,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_ADT-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:19,369] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n01_ADT-CaRPool_THP1-L1_fastqc.html [2021-11-25 01:51:19,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GDO-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:19,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_GDO-CaRPool_THP1-L2_fastqc.html [2021-11-25 01:51:19,498] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_ADT-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:19,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVTN5DSX2_l01_n02_ADT-CaRPool_THP1-L3_fastqc.html [2021-11-25 01:51:19,892] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-11-25 01:51:19,894] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-11-25 01:51:19,903] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-11-25 01:51:19,912] multiqc.modules.custom_content.custom_content [INFO ] demux_report-1: Found 17 samples (table) [2021-11-25 01:51:19,923] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-11-25 01:51:19,928] multiqc [DEBUG ] No samples found: conpair [2021-11-25 01:51:19,934] multiqc [DEBUG ] No samples found: peddy [2021-11-25 01:51:19,940] multiqc [DEBUG ] No samples found: somalier [2021-11-25 01:51:19,946] multiqc [DEBUG ] No samples found: methylQA [2021-11-25 01:51:19,955] multiqc [DEBUG ] No samples found: mosdepth [2021-11-25 01:51:19,961] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-11-25 01:51:19,965] multiqc [DEBUG ] No samples found: qualimap [2021-11-25 01:51:19,970] multiqc [DEBUG ] No samples found: preseq [2021-11-25 01:51:19,976] multiqc [DEBUG ] No samples found: quast [2021-11-25 01:51:19,982] multiqc [DEBUG ] No samples found: qorts [2021-11-25 01:51:19,987] multiqc [DEBUG ] No samples found: rna_seqc [2021-11-25 01:51:19,994] multiqc [DEBUG ] No samples found: rockhopper [2021-11-25 01:51:19,999] multiqc [DEBUG ] No samples found: rsem [2021-11-25 01:51:20,011] multiqc [DEBUG ] No samples found: rseqc [2021-11-25 01:51:20,017] multiqc [DEBUG ] No samples found: busco [2021-11-25 01:51:20,022] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-11-25 01:51:20,028] multiqc [DEBUG ] No samples found: disambiguate [2021-11-25 01:51:20,034] multiqc [DEBUG ] No samples found: supernova [2021-11-25 01:51:20,048] multiqc [DEBUG ] No samples found: deeptools [2021-11-25 01:51:20,053] multiqc [DEBUG ] No samples found: sargasso [2021-11-25 01:51:20,059] multiqc [DEBUG ] No samples found: verifybamid [2021-11-25 01:51:20,065] multiqc [DEBUG ] No samples found: mirtrace [2021-11-25 01:51:20,070] multiqc [DEBUG ] No samples found: happy [2021-11-25 01:51:20,076] multiqc [DEBUG ] No samples found: mirtop [2021-11-25 01:51:20,084] multiqc [DEBUG ] No samples found: homer [2021-11-25 01:51:20,090] multiqc [DEBUG ] No samples found: macs2 [2021-11-25 01:51:20,095] multiqc [DEBUG ] No samples found: theta2 [2021-11-25 01:51:20,100] multiqc [DEBUG ] No samples found: snpeff [2021-11-25 01:51:20,109] multiqc [DEBUG ] No samples found: gatk [2021-11-25 01:51:20,114] multiqc [DEBUG ] No samples found: htseq [2021-11-25 01:51:20,120] multiqc [DEBUG ] No samples found: bcftools [2021-11-25 01:51:20,126] multiqc [DEBUG ] No samples found: featureCounts [2021-11-25 01:51:20,133] multiqc [DEBUG ] No samples found: fgbio [2021-11-25 01:51:20,147] multiqc [DEBUG ] No samples found: dragen [2021-11-25 01:51:20,152] multiqc [DEBUG ] No samples found: dedup [2021-11-25 01:51:20,158] multiqc [DEBUG ] No samples found: damageprofiler [2021-11-25 01:51:20,181] multiqc [DEBUG ] No samples found: biobambam2 [2021-11-25 01:51:20,188] multiqc [DEBUG ] No samples found: mtnucratio [2021-11-25 01:51:20,190] multiqc [DEBUG ] No samples found: picard [2021-11-25 01:51:20,196] multiqc [DEBUG ] No samples found: prokka [2021-11-25 01:51:20,201] multiqc [DEBUG ] No samples found: samblaster [2021-11-25 01:51:20,210] multiqc [DEBUG ] No samples found: samtools [2021-11-25 01:51:20,216] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-11-25 01:51:20,222] multiqc [DEBUG ] No samples found: bamtools [2021-11-25 01:51:20,228] multiqc [DEBUG ] No samples found: jellyfish [2021-11-25 01:51:20,235] multiqc [DEBUG ] No samples found: vcftools [2021-11-25 01:51:20,241] multiqc [DEBUG ] No samples found: longranger [2021-11-25 01:51:20,247] multiqc [DEBUG ] No samples found: stacks [2021-11-25 01:51:20,252] multiqc [DEBUG ] No samples found: varscan2 [2021-11-25 01:51:20,266] multiqc [DEBUG ] No samples found: bbmap [2021-11-25 01:51:20,272] multiqc [DEBUG ] No samples found: bismark [2021-11-25 01:51:20,278] multiqc [DEBUG ] No samples found: biscuit [2021-11-25 01:51:20,285] multiqc [DEBUG ] No samples found: hicexplorer [2021-11-25 01:51:20,292] multiqc [DEBUG ] No samples found: hicup [2021-11-25 01:51:20,297] multiqc [DEBUG ] No samples found: hicpro [2021-11-25 01:51:20,302] multiqc [DEBUG ] No samples found: salmon [2021-11-25 01:51:20,308] multiqc [DEBUG ] No samples found: kallisto [2021-11-25 01:51:20,314] multiqc [DEBUG ] No samples found: slamdunk [2021-11-25 01:51:20,320] multiqc [DEBUG ] No samples found: star [2021-11-25 01:51:20,325] multiqc [DEBUG ] No samples found: hisat2 [2021-11-25 01:51:20,331] multiqc [DEBUG ] No samples found: tophat [2021-11-25 01:51:20,337] multiqc [DEBUG ] No samples found: bowtie2 [2021-11-25 01:51:20,342] multiqc [DEBUG ] No samples found: bowtie1 [2021-11-25 01:51:20,347] multiqc [DEBUG ] No samples found: snpsplit [2021-11-25 01:51:20,352] multiqc [DEBUG ] No samples found: kat [2021-11-25 01:51:20,357] multiqc [DEBUG ] No samples found: leehom [2021-11-25 01:51:20,362] multiqc [DEBUG ] No samples found: adapterRemoval [2021-11-25 01:51:20,367] multiqc [DEBUG ] No samples found: clipandmerge [2021-11-25 01:51:20,372] multiqc [DEBUG ] No samples found: cutadapt [2021-11-25 01:51:20,377] multiqc [DEBUG ] No samples found: flexbar [2021-11-25 01:51:20,383] multiqc [DEBUG ] No samples found: kaiju [2021-11-25 01:51:20,388] multiqc [DEBUG ] No samples found: kraken [2021-11-25 01:51:20,394] multiqc [DEBUG ] No samples found: malt [2021-11-25 01:51:20,399] multiqc [DEBUG ] No samples found: trimmomatic [2021-11-25 01:51:20,405] multiqc [DEBUG ] No samples found: sickle [2021-11-25 01:51:20,410] multiqc [DEBUG ] No samples found: skewer [2021-11-25 01:51:20,415] multiqc [DEBUG ] No samples found: sortmerna [2021-11-25 01:51:20,420] multiqc [DEBUG ] No samples found: biobloomtools [2021-11-25 01:51:20,426] multiqc [DEBUG ] No samples found: fastq_screen [2021-11-25 01:51:20,431] multiqc [DEBUG ] No samples found: afterqc [2021-11-25 01:51:20,437] multiqc [DEBUG ] No samples found: fastp [2021-11-25 01:51:26,902] multiqc.modules.fastqc.fastqc [INFO ] Found 34 reports [2021-11-25 01:51:27,466] multiqc [DEBUG ] No samples found: pycoqc [2021-11-25 01:51:27,472] multiqc [DEBUG ] No samples found: minionqc [2021-11-25 01:51:27,478] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-11-25 01:51:27,483] multiqc [DEBUG ] No samples found: clusterflow [2021-11-25 01:51:27,488] multiqc [DEBUG ] No samples found: bcl2fastq [2021-11-25 01:51:27,493] multiqc [DEBUG ] No samples found: interop [2021-11-25 01:51:27,499] multiqc [DEBUG ] No samples found: ivar [2021-11-25 01:51:27,504] multiqc [DEBUG ] No samples found: flash [2021-11-25 01:51:27,509] multiqc [DEBUG ] No samples found: seqyclean [2021-11-25 01:51:27,509] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2021-11-25 01:51:27,509] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2021-11-25 01:51:27,509] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 1 Demultiplexing Report'. [2021-11-25 01:51:27,509] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-11-25 01:51:27,509] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-11-25 01:51:27,549] multiqc [INFO ] Compressing plot data [2021-11-25 01:51:28,221] multiqc [INFO ] Report : multiqc_report.html [2021-11-25 01:51:28,221] multiqc [INFO ] Data : multiqc_data [2021-11-25 01:51:28,221] multiqc [DEBUG ] Moving data file from '/state/partition1/job-12399895/tmp4dabg0y9/multiqc_data' to '/scratch/gencore/logs/html/HVTN5DSX2/1/multiqc_data' [2021-11-25 01:51:28,354] multiqc [INFO ] MultiQC complete