FastQCFastQC Report
Fri 1 Jun 2018
HVT5JBGX5_n01_03_26_gr_dam_bzip1_6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT5JBGX5_n01_03_26_gr_dam_bzip1_6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11724506
Sequences flagged as poor quality0
Sequence length76
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGATCT434400.066.45814512
AGGATCA418400.066.29780612
GAGGATC1402100.066.2009211
GGATCTA37200.065.4805513
AGGATCG206950.065.4627912
CCGAGGA1426900.065.311149
CGAGGAT1428400.065.1170510
GGTCGCG1463000.065.016871
GGATCTT116600.064.6236413
GGATCAA91600.064.49454513
GGATCTC143150.064.3488113
CGGCCGA1509500.064.190756
GGCCGAG1518450.063.8652347
GGATCCA110900.063.4954313
GCCGAGG1531450.063.249978
GTCGCGG1519700.062.8926122
GGATCCC76000.062.67444613
GGATCAT118150.062.56136713
GGATCTG156350.062.40809213
GGATCGT52600.061.74591413
Produced by FastQC (version 0.11.2)