FastQCFastQC Report
Fri 1 Jun 2018
HVT5JBGX5_n01_03_26_gr_dam_11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT5JBGX5_n01_03_26_gr_dam_11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14761166
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGATCT536700.066.8710412
GAGGATC1723150.066.6869111
AGGATCA521700.066.19089512
AGGATCG248450.065.9517612
GGATCTA50900.065.594313
CGAGGAT1757100.065.5139310
CCGAGGA1761800.065.404729
GGTCGCG1802200.065.107221
GGATCTC167000.065.0909313
GGATCAA125150.064.96117413
GGATCTT155200.064.78573613
CGGCCGA1849450.064.481796
GGCCGAG1860650.064.123597
GGATCCA138350.063.9236513
GGATCAT149650.063.58694513
GCCGAGG1875150.063.5603378
GGATCTG184300.063.50039313
GGATCCC87250.063.4565613
GTCGCGG1859700.063.2685432
GGATCAC124100.062.97271713
Produced by FastQC (version 0.11.2)