FastQCFastQC Report
Fri 1 Jun 2018
HVT5JBGX5_n01_03_12_gr_dam_8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT5JBGX5_n01_03_12_gr_dam_8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20066899
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCG1935700.067.0368961
GAGGATC1968450.066.5994211
AGGATCT703250.066.5529312
AGGATCA606250.065.93841612
AGGATCG214550.065.83710512
CGGCCGA2011850.065.741746
GTCGCGG1984700.065.603522
GGATCTT287450.065.3340713
GGCCGAG2029000.065.23067
GGATCTC182600.065.205613
CGCGGCC2019450.065.013864
CGAGGAT2019450.064.9885510
GCCGAGG2039050.064.909268
TCGCGGC2007850.064.899433
GGATCCA181750.064.81731413
GCGGCCG2040350.064.811445
CCGAGGA2025850.064.8009959
GGATCTG147900.064.4613
GGATCTA103700.064.3948213
GGATCAA206000.064.1868513
Produced by FastQC (version 0.11.2)