FastQCFastQC Report
Thu 3 Nov 2022
HVT2NAFX3_n02_f_mtd.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT2NAFX3_n02_f_mtd.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15318482
Sequences flagged as poor quality0
Sequence length72
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA382770.24987462856959328No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT380180.24818386051568297No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTAT320420.209172162098046No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC300960.196468553476774No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA255630.1668768485023516No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA207410.1353985336144926No Hit
CATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATA165370.10795456103287518No Hit
GTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATAT163720.10687743080548061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)