FastQCFastQC Report
Thu 3 Nov 2022
HVT2NAFX3_n02_f_head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT2NAFX3_n02_f_head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29394381
Sequences flagged as poor quality0
Sequence length72
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT987720.3360234052896028No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA986260.3355267117208558No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTAT826950.28132927854476675No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC770460.2621113198471504No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA729060.24802699536350162No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA586690.19959256838917613No Hit
GTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGTATATAT348590.11859069255447155No Hit
CATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATACATATATA347880.11834914979158773No Hit
ATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAAT339430.11547445071219564No Hit
ATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTAT322130.10958897212361779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)