FastQCFastQC Report
Thu 3 Nov 2022
HVT2NAFX3_n02_f_3-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT2NAFX3_n02_f_3-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42243488
Sequences flagged as poor quality0
Sequence length72
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA1169990.27696339847694396No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT1147490.2716371337518341No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTAT953960.22582415542958956No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC937500.22192769687957586No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA781620.18502733486401501No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA666560.15779000067418675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)