FastQCFastQC Report
Thu 3 Nov 2022
HVT2NAFX3_n01_f_mtd.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT2NAFX3_n01_f_mtd.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15318482
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA653220.4264260649325436No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA588890.38443104218812285No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT462550.30195550707961794No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT460160.30039530026539185No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA443710.28965663830136695No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA404590.26411885981913874No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT389770.25444427195854No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT277800.1813495619213444No Hit
ATATTATATTATATTATATTATATTATATTATATTATATTATATTATATT170830.11151888287625367No Hit
ATATAATATAATATAATATAATATAATATAATATAATATAATATAATATA166690.10881626521479087No Hit
CATATATACATATATACATATATACATATATACATATATACATATATACA166370.10860736723129615No Hit
GTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGT164800.10758246149977524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)