FastQCFastQC Report
Thu 3 Nov 2022
HVT2NAFX3_n01_f_head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT2NAFX3_n01_f_head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29394381
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA1391150.47327072476879173No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1235400.42028440741786677No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT1183540.4026415796951125No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA1158570.39414675886524025No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA1041300.35425137886047No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1004380.34169115519051074No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT995000.33850006911184827No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT598790.20370900139043582No Hit
ATATTATATTATATTATATTATATTATATTATATTATATTATATTATATT411540.14000635019325633No Hit
ATATAATATAATATAATATAATATAATATAATATAATATAATATAATATA379890.12923898618582919No Hit
CATATATACATATATACATATATACATATATACATATATACATATATACA353720.12033592406657585No Hit
GTATATATGTATATATGTATATATGTATATATGTATATATGTATATATGT347360.1181722452328559No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA299250.10180517153941769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)