FastQCFastQC Report
Thu 3 Nov 2022
HVT2NAFX3_n01_f_3-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT2NAFX3_n01_f_3-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42243488
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA1917340.453878240357425No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1737380.41127759147161336No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT1416380.33528954806004657No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA1378680.3263650956095292No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1360460.3220520047965736No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA1237470.29293745819474No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1187280.28105633701459504No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT804860.1905287745178618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)