Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content HVNNCDRXY_n01_JK13_2_hic HVNNCDRXY_n01_JK13_2_hic.fastq.gz Conventional base calls Sanger / Illumina 1.9 39736786.0 0.0 101.0 41.0 78.58246911952229 101.0 pass pass pass pass warn pass pass pass pass pass pass HVNNCDRXY_n01_JK88 HVNNCDRXY_n01_JK88.fastq.gz Conventional base calls Sanger / Illumina 1.9 168407075.0 0.0 101.0 41.0 57.13243031249261 101.0 pass pass pass pass fail pass pass pass warn pass pass HVNNCDRXY_n01_JK89 HVNNCDRXY_n01_JK89.fastq.gz Conventional base calls Sanger / Illumina 1.9 101940064.0 0.0 101.0 35.0 66.46395792472154 101.0 pass pass pass pass fail pass pass pass warn pass pass HVNNCDRXY_n01_JK90 HVNNCDRXY_n01_JK90.fastq.gz Conventional base calls Sanger / Illumina 1.9 139075556.0 0.0 101.0 35.0 44.00183366120383 101.0 pass pass pass pass fail pass pass pass fail warn pass HVNNCDRXY_n01_JK91 HVNNCDRXY_n01_JK91.fastq.gz Conventional base calls Sanger / Illumina 1.9 334451893.0 0.0 101.0 35.0 50.068510192326464 101.0 pass pass pass pass warn pass pass pass warn pass pass HVNNCDRXY_n01_undetermined HVNNCDRXY_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 26289020.0 0.0 101.0 38.0 64.09712070310675 101.0 pass pass pass pass warn fail pass pass warn pass pass HVNNCDRXY_n02_JK13_2_hic HVNNCDRXY_n02_JK13_2_hic.fastq.gz Conventional base calls Sanger / Illumina 1.9 39736786.0 0.0 101.0 41.0 78.91490485685043 101.0 pass pass pass pass warn pass pass pass pass pass pass HVNNCDRXY_n02_JK88 HVNNCDRXY_n02_JK88.fastq.gz Conventional base calls Sanger / Illumina 1.9 168407075.0 0.0 101.0 41.0 61.72287314080565 101.0 pass pass pass pass fail pass pass pass warn pass pass HVNNCDRXY_n02_JK89 HVNNCDRXY_n02_JK89.fastq.gz Conventional base calls Sanger / Illumina 1.9 101940064.0 0.0 101.0 35.0 69.08404877171479 101.0 pass pass pass pass fail pass pass pass warn pass pass HVNNCDRXY_n02_JK90 HVNNCDRXY_n02_JK90.fastq.gz Conventional base calls Sanger / Illumina 1.9 139075556.0 0.0 101.0 35.0 48.31563287823407 101.0 pass pass pass pass fail pass pass pass fail pass pass HVNNCDRXY_n02_JK91 HVNNCDRXY_n02_JK91.fastq.gz Conventional base calls Sanger / Illumina 1.9 334451893.0 0.0 101.0 35.0 52.78980746318794 101.0 pass pass pass pass warn pass pass pass warn pass pass HVNNCDRXY_n02_undetermined HVNNCDRXY_n02_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 26289020.0 0.0 101.0 39.0 65.89233729963158 101.0 pass pass pass pass warn fail pass pass warn fail pass