FastQCFastQC Report
Tue 6 Feb 2024
HVLTFDRX3_n01_CIVIR_Ferret_Flu_R2_G1b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVLTFDRX3_n01_CIVIR_Ferret_Flu_R2_G1b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5555
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTATCTGCACAGACTACAGAATGTTTGCTGTCACCAATGCTTCCCT230.41404140414041407No Hit
CTATCTGCACAGACTACAGAATGTTTGCTGTCACCAATGCTTCCCTCAAT180.32403240324032406No Hit
GACTACAGAATGTTTGCTGTCACCAATGCTTCCCTCAATGGACGACTACA180.32403240324032406No Hit
ATGTATAGGTTATCATGCGAACAATTCAACAGACACTGTAGACACAGTAC170.30603060306030605No Hit
GAATTAGGGAAGATATTTTAGGGGAAAGAGATACCTGGAATTTATTTACT150.27002700270027No Hit
CCTCATAAGTATGTCCTGGAAGAGAAGGTAATGGTGAAATTTCTCCAACT140.252025202520252No Hit
ATGATGGACGACTAATCCAGAATAGCATAACAATAGAGAGGATGGTGCTT130.234023402340234No Hit
GCTCACCACTGCTCCCAGCATGCAATCAGTGCTCAGTCTCTATCTGCACA120.21602160216021601No Hit
GTCCCTGGTTAAGCTCACCACTGCTCCCAGCATGCAATCAGTGCTCAGTC120.21602160216021601No Hit
GGTTAACAGAGTGTGTTACTGTTACATTCTTTTCTAGTACTGTGTCTACA100.18001800180018002No Hit
GTGTCTACAGTGTCTGTTGAATTGTTCGCATGATAACCTATACATAATGT100.18001800180018002No Hit
CTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCC100.18001800180018002No Hit
AGCAGGGATTGTCCCTGGTTAAGCTCACCACTGCTCCCAGCATGCAATCA100.18001800180018002No Hit
GTTGTAAGGCTTGCATAAATGTTATTTGTTCGAAACTATTCTCTGTCGCT90.16201620162016203No Hit
GGGTATGCCAAGTGCTTTTTAAAGGAATTAGGGAAGATATTTTAGGGGAA90.16201620162016203No Hit
GCCAAGCACCGTGCTTGGTACTTGACGTGTAGTCCCTCGTCCGATTTTTG90.16201620162016203No Hit
GGTATGCCAAGTGCTTTTTAAAGGAATTAGGGAAGATATTTTAGGGGAAA90.16201620162016203No Hit
GTCTTATACAATCCAGCCCTGTTAGTTCTGGATGCTGAACAAAACTCCCG80.14401440144014402No Hit
TTCTAGTACTGTGTCTACAGTGTCTGTTGAATTGTTCGCATGATAACCTA80.14401440144014402No Hit
AGTATGTCCTGGAAGAGAAGGTAATGGTGAAATTTCTCCAACTATTGCTC80.14401440144014402No Hit
ATTCAAGTCCTCCGATGAGGACCCCAACTGCATTTTTGACATCCTCATAA70.126012601260126No Hit
GGTTAAGCTCACCACTGCTCCCAGCATGCAATCAGTGCTCAGTCTCTATC70.126012601260126No Hit
CTATTAGAAGAGGCCTTATTTTCTCAATTTTCTTCTTTGTTGATTCATTG70.126012601260126No Hit
GCTCCCAGCATGCAATCAGTGCTCAGTCTCTATCTGCACAGACTACAGAA70.126012601260126No Hit
GTACTTGACGTGTAGTCCCTCGTCCGATTTTTGTAGTCGTCCATTGAGGG70.126012601260126No Hit
AAAGACAACAGTGTAAGAATCGGTTCCAAGGGGGATGTGTTTGTCATAAG70.126012601260126No Hit
GCTATATACATTTGCAACCGCAAATGCAGACACATTATGTATAGGTTATC70.126012601260126No Hit
CATTATGTATAGGTTATCATGCGAACAATTCAACAGACACTGTAGACACA60.10801080108010801No Hit
GCATTAGAGAGCACATTCTGGGATCCATTCCGGTGCGAACAAGCGCTCTT60.10801080108010801No Hit
CCAATGCTTCCCTCAATGGACGACTACAAAAATCGGACGAGGGACTACAC60.10801080108010801No Hit
AGCGAAAGCAGGTGGGTATGCCAAGTGCTTTTTAAAGGAATTAGGGAAGA60.10801080108010801No Hit
GTGCTTGGCACAAACTGGACCTTCAGTAAATAAATTCCAGGTATCTCTTT60.10801080108010801No Hit
CTTCTGACCTGGCTATTCAGCGGCTTAACCCCACCCAACCCCATCCACCG60.10801080108010801No Hit
CACCAATGCTTCCCTCAATGGACGACTACAAAAATCGGACGAGGGACTAC60.10801080108010801No Hit
GGTTCATGCTCATGCCTAGGCAAAAGATAATAGGCCCTCTTTGCGTGCGA60.10801080108010801No Hit
GTAGAAACAAGGGTGTTTTTTATCATTAAATAAGCTGAAACGAGAAAGCT60.10801080108010801No Hit
TATGTATCCTATCTGATATTCCAGATTCTGGTTGAAAGACACCCACGGTC60.10801080108010801No Hit
GCAGGTGGGTATGCCAAGTGCTTTTTAAAGGAATTAGGGAAGATATTTTA60.10801080108010801No Hit
CTATTGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTT60.10801080108010801No Hit
TAATAACAGACACTATCAAGAGTTGGAGAAACAATATATTGAGAACACAA60.10801080108010801No Hit
ATTCTACACTGTAGAGACCCATTAGAGCACATCCAGAAACTGATTGCCCC60.10801080108010801No Hit
GTCAAGTACCAAGCACGGTGCTTGGCACAAACTGGACCTTCAGTAAATAA60.10801080108010801No Hit
GATTGAAAGCGACAGAGAATAGTTTCGAACAAATAACATTTATGCAAGCC60.10801080108010801No Hit
GGTCTATCCCGACCAGTGAGTACCCTTCCCTTTCAAAGTCATGCCCACTT60.10801080108010801No Hit
ATATACATCCGATCACAATTGGAAAATGTCCAAAATATGTAAAAAGCACA60.10801080108010801No Hit
TTTTAAAGGAATTAGGGAAGATATTTTAGGGGAAAGAGATACCTGGAATT60.10801080108010801No Hit
AAAGCAGGCAGGTGCCTAGAGGGCAGGAGAGGGAGCAGGACCCAGGGGCC60.10801080108010801No Hit
CTACAGAATGTTTGCTGTCACCAATGCTTCCCTCAATGGACGACTACAAA60.10801080108010801No Hit
CCTATATGAACTGCTAGGGAAAAATTTCTCGAATAGATTGCAGCACTTCT60.10801080108010801No Hit
ACCTGGAATTTATTTACTGAAGGTCCAGTTTGTGCCAAGCACCGTGCTTG60.10801080108010801No Hit
GTATAACATTGTGGGATCTTGTGACCATTGAATTTTCACAATTTCCCAGT60.10801080108010801No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)