FastQCFastQC Report
Thu 23 May 2024
HVKNTDMXY_n01_CITE-seq_test2_BCells_SC_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVKNTDMXY_n01_CITE-seq_test2_BCells_SC_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18026
Sequences flagged as poor quality0
Sequence length26
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGGCTGTTAATTGTCAGTTCAGTG350.19416398535448795No Hit
CAAGGCAGATCGGAAGAGCACACGTC230.12759347609009208No Hit
CAAGGCCGAGATCGGAAGAGCACACG190.10540330633529346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)