FastQCFastQC Report
Thu 29 Feb 2024
HVJ5VDRX3_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVJ5VDRX3_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1031824387
Sequences flagged as poor quality0
Sequence length10
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGGATG29768175828.850040932401416No Hit
TTGCCCGTGC27280241226.43884128317274No Hit
TTCACACCTT22060933321.38051162382538No Hit
GAGACGCACG16159135015.660741501741612No Hit
GGGGGGGGGG324024273.140304436320713No Hit
GTGACGCACG214164122.0755869186487836No Hit
TTGCCGGGCA10393640.10073070699772092No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)