FastQCFastQC Report
Fri 17 Dec 2021
HVJ55BGXK_n01_PtGATA15_ampPt-B_v.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVJ55BGXK_n01_PtGATA15_ampPt-B_v.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29031378
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT1635580.5633835224769558TruSeq Adapter, Index 2 (97% over 37bp)
CGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATGCC326040.11230607103803339TruSeq Adapter, Index 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)