FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l02n02_chip_ctrl_replicate_2_root_h3k27me3.3520000009e553.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l02n02_chip_ctrl_replicate_2_root_h3k27me3.3520000009e553.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5451776
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGGAA23350.07.229155545
GTAGGGA24650.06.84790245
CGTGTAG41900.06.768145645
TCGTGTA46800.06.732795245
GTCGTGT57150.06.537445
TGTAGGG30100.06.50527945
GTGTAGG35550.05.95115745
CGTCGTG73650.05.103368844
Produced by FastQC (version 0.11.2)