HVHWMBCXY_l02n02_chip_ctrl_replicate_1_root_h3k27me3.3520000009e539.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	HVHWMBCXY_l02n02_chip_ctrl_replicate_1_root_h3k27me3.3520000009e539.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2670539
Sequences flagged as poor quality	0
Sequence length	51
%GC	57

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGAAAGA	1525	0.0	12.1023035	45
TAGGGAA	2595	0.0	10.928416	45
AAGAGTG	445	7.2759576E-12	10.621439	45
AGGGAAA	2410	0.0	10.366447	45
GGGAAAG	1835	0.0	9.567149	45
AAAGAGT	545	3.6379788E-12	9.4985075	45
TGTAGGG	4100	0.0	9.222517	45
GTAGGGA	3245	0.0	9.155524	45
GAAAGAG	1000	0.0	8.77786	45
GTGTAGG	5130	0.0	8.292176	45
CGTGTAG	5960	0.0	7.1751566	44
TCGTGTA	6865	0.0	6.425983	45
GTCGTGT	8090	0.0	6.037195	45
CCCCTCG	565	0.001197339	5.575054	1
CGTCGTG	10140	0.0	5.2605896	45
CTACTTC	615	0.0034765957	5.121798	1
CGTATCG	670	0.0018406232	5.0371623	1