FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l02n01_input_ctrl_replicate_1_root_h3k27me3.3510000009e5a6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l02n01_input_ctrl_replicate_1_root_h3k27me3.3510000009e5a6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91142458
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA759450.07.4156145
GTCTGAA699450.07.20892345
TCTGAAC634400.06.89474645
CTGAACT571250.06.88888345
TGAACTC518050.06.70595845
ACGTCTG880100.06.62656145
GAACTCC425050.06.426342545
ACTCCAG269950.06.201186745
CACGTCT1051500.06.164802645
ACACGTC1214500.05.84873945
AACTCCA418150.05.563827545
CACACGT1381450.05.466029645
CTCCAGT237250.05.07379345
GCACACG1637450.05.060796345