FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l02n01_chip_ctrl_replicate_2_root_h3k27me3.3510000009e556.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l02n01_chip_ctrl_replicate_2_root_h3k27me3.3510000009e556.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5451776
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTCTG37850.07.66837545
ACACGTC55400.06.660603545
CGTCTGA31450.06.510288245
GTCTGAA31150.06.35629645
CACGTCT48900.06.34964945
TCTGAAC29800.06.115729345
CACACGT63850.05.884845744
CTGAACT26800.05.7928745
ACTCCAG16700.05.658643745
GAACTCC23600.05.148269744
AACTCCA26600.05.07515345
Produced by FastQC (version 0.11.2)