FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l01n02_input_ctrl_replicate_3_shoot_h3k27me3.3520000009e5d9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l01n02_input_ctrl_replicate_3_shoot_h3k27me3.3520000009e5d9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65429358
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCCGA199950.021.8173549
TTCCGAT206750.021.13242710
TCCGATC224650.019.46863711
CCGATCT226350.019.31246412
CGTGTGC227900.019.2420521
GTGCTCT257200.017.0573024
TCTTCCG267650.016.5509978
TGTGCTC274100.016.005773
GTGTGCT274200.015.999922
GCTCTTC299350.014.7832796
TGCTCTT368850.012.1319525
CTCTTCC429450.010.7552887
CGATCTA139400.08.52150913
CGATCTG158850.07.20901513
CGATCTT175500.06.601999313
CGATCTC206450.06.364192513
Produced by FastQC (version 0.11.2)