FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l01n02_input_ctrl_replicate_2_shoot_h3k27me3.3520000009e5bf.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l01n02_input_ctrl_replicate_2_shoot_h3k27me3.3520000009e5bf.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5960319
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGT39400.05.54108845
ATCGGAA76850.05.24238245
Produced by FastQC (version 0.11.2)