FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l01n02_chip_ctrl_replicate_3_shoot_h3k27me3.3520000009e57c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l01n02_chip_ctrl_replicate_3_shoot_h3k27me3.3520000009e57c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3186527
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAGAGT10550.08.53351745
TAGGGAA24500.08.08420145
GTAGGGA28750.07.98514545
GTGTAGG42550.07.77567845
TGTAGGG33550.07.64773545
GGGAAAG22800.07.20623745
CGTGTAG48450.06.828794544
AGGGAAA27900.06.53433445
GAAAGAG18300.06.395474445
TCGTGTA52250.06.202927643
AAGAGTG7601.6169724E-65.92293445
GGAAAGA22150.05.69029545
GTCGTGT59600.05.437798542