FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l01n02_chip_ctrl_replicate_2_shoot_h3k27me3.3520000009e56f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l01n02_chip_ctrl_replicate_2_shoot_h3k27me3.3520000009e56f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15606756
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAAGAGT47850.07.526060645
TAGGGAA108800.07.42668845
GTAGGGA127450.07.381865545
TGTAGGG148900.06.862633745
GTGTAGG180750.06.188818545
GGGAAAG108850.06.161940645
AGGGAAA127250.06.15532745
AAGAGTG40100.05.949646545
GGAAAGA103550.05.71656745
CGTGTAG204700.05.68463245
GAAAGAG90200.05.46471145
TCGTGTA228550.05.41640545
AGAGTGT28350.05.398654545