FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l01n02_chip_ctrl_replicate_1_shoot_h3k9ac.3520000009e5f3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l01n02_chip_ctrl_replicate_1_shoot_h3k9ac.3520000009e5f3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36363439
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCCGA76800.09.9601649
TTCCGAT78050.09.80063410
TCCGATC90250.08.94943111
CGTGTGC94500.08.5951391
CCGATCT96000.08.55401112
GTGCTCT102150.07.37830264
GTGTGCT110650.07.09625772
TCTTCCG113650.07.0878
TGTGCTC111900.06.97678473
GCTCTTC131250.06.1366676
TGCTCTT159750.05.1404465
Produced by FastQC (version 0.11.2)