FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l01n01_chip_ctrl_replicate_3_shoot_h3k27me3.3510000009e57f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l01n01_chip_ctrl_replicate_3_shoot_h3k27me3.3510000009e57f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3186527
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCAGT11200.08.43800545
CGTCTGA40800.07.99680345
GAACTCC20550.07.555197245
ACTCCAG13250.07.472146545
TGAACTC24300.07.40785145
GTCTGAA36050.07.17796245
AACTCCA18300.07.008617445
ACGTCTG46150.06.972249544
TCTGAAC31350.06.962140645
CTGAACT29250.06.923492445
CACGTCT53500.06.014001443
ACACGTC59000.05.529645442
GCTCTAT5350.00381326165.467362
TCCAGTC8254.004089E-55.18212945