FastQCFastQC Report
Thu 21 Sep 2017
HVHWMBCXY_l01n01_chip_ctrl_replicate_2_shoot_h3k27me3.3510000009e562.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHWMBCXY_l01n01_chip_ctrl_replicate_2_shoot_h3k27me3.3510000009e562.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15606756
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTCCAG64150.07.470838545
TGAACTC111550.06.89831345
GAACTCC97200.06.85191345
CTCCAGT53300.06.838710345
TCTGAAC141900.06.738960745
GTCTGAA155800.06.55654145
CGTCTGA167400.06.51887545
CTGAACT126900.06.489419545
AACTCCA95200.06.00320545
ACGTCTG194350.05.985388845
TCCAGTC47100.05.39813745
CACGTCT229150.05.35134645
CCAGTCA34450.05.094384745