[2021-02-14 08:44:32,596] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-02-14 08:44:32,596] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-02-14 08:44:32,596] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-02-14 08:44:32,597] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-02-14 08:44:32,597] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-02-14 08:44:32,597] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVHVCDRXX/merged [2021-02-14 08:44:34,280] multiqc [DEBUG ] Latest MultiQC version is v1.9 [2021-02-14 08:44:34,280] multiqc [INFO ] This is MultiQC v1.9 [2021-02-14 08:44:34,280] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HVHVCDRXX/merged [2021-02-14 08:44:34,280] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HVHVCDRXX/merged [2021-02-14 08:44:34,280] multiqc [INFO ] Template : default [2021-02-14 08:44:34,280] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-02-14 08:44:34,280] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HVHVCDRXX/merged [2021-02-14 08:44:34,281] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-02-14 08:44:34,281] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-2761342/tmppbb66a_z [2021-02-14 08:44:34,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E211_fastqc.html [2021-02-14 08:44:34,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E211_fastqc.html [2021-02-14 08:44:34,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search 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08:44:38,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E336_fastqc.html [2021-02-14 08:44:38,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E54_fastqc.html [2021-02-14 08:44:38,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E54_fastqc.html [2021-02-14 08:44:38,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E387_fastqc.html [2021-02-14 08:44:38,854] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E387_fastqc.html [2021-02-14 08:44:38,913] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E251_fastqc.html [2021-02-14 08:44:38,914] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E219_fastqc.html [2021-02-14 08:44:39,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E219_fastqc.html [2021-02-14 08:44:39,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E151_fastqc.html [2021-02-14 08:44:39,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E151_fastqc.html [2021-02-14 08:44:39,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E427_fastqc.html [2021-02-14 08:44:39,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E427_fastqc.html [2021-02-14 08:44:39,737] multiqc [DEBUG ] File ignored by hicexplorer because 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08:44:40,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E136_fastqc.html [2021-02-14 08:44:40,156] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E366_fastqc.html [2021-02-14 08:44:40,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E366_fastqc.html [2021-02-14 08:44:40,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E295_fastqc.html [2021-02-14 08:44:40,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E295_fastqc.html [2021-02-14 08:44:40,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E38_fastqc.html [2021-02-14 08:44:40,301] multiqc [DEBUG ] File ignored by 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08:44:40,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E380_fastqc.html [2021-02-14 08:44:40,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E380_fastqc.html [2021-02-14 08:44:41,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E400_fastqc.html [2021-02-14 08:44:41,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E400_fastqc.html [2021-02-14 08:44:41,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E360_fastqc.html [2021-02-14 08:44:41,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E360_fastqc.html [2021-02-14 08:44:41,141] multiqc [DEBUG ] File ignored by 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[2021-02-14 08:44:41,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E408_fastqc.html [2021-02-14 08:44:41,507] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E327_fastqc.html [2021-02-14 08:44:41,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E327_fastqc.html [2021-02-14 08:44:41,569] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E151_fastqc.html [2021-02-14 08:44:41,571] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E151_fastqc.html [2021-02-14 08:44:41,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E372_fastqc.html [2021-02-14 08:44:41,629] multiqc [DEBUG ] File 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08:44:42,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E238_fastqc.html [2021-02-14 08:44:42,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E238_fastqc.html [2021-02-14 08:44:42,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E217_fastqc.html [2021-02-14 08:44:42,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E217_fastqc.html [2021-02-14 08:44:42,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E437_fastqc.html [2021-02-14 08:44:42,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E437_fastqc.html [2021-02-14 08:44:42,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E414_fastqc.html [2021-02-14 08:44:42,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E414_fastqc.html [2021-02-14 08:44:42,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E416_fastqc.html [2021-02-14 08:44:42,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E416_fastqc.html [2021-02-14 08:44:42,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E300_fastqc.html [2021-02-14 08:44:42,570] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E300_fastqc.html [2021-02-14 08:44:42,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E175_fastqc.html [2021-02-14 08:44:42,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E175_fastqc.html [2021-02-14 08:44:42,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E395_fastqc.html [2021-02-14 08:44:42,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E395_fastqc.html [2021-02-14 08:44:42,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E434_fastqc.html [2021-02-14 08:44:42,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E434_fastqc.html [2021-02-14 08:44:42,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E136_fastqc.html [2021-02-14 08:44:42,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E136_fastqc.html [2021-02-14 08:44:42,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E232_fastqc.html [2021-02-14 08:44:42,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E232_fastqc.html [2021-02-14 08:44:42,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E419_fastqc.html [2021-02-14 08:44:42,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E419_fastqc.html [2021-02-14 08:44:42,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E354_fastqc.html [2021-02-14 08:44:42,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E354_fastqc.html [2021-02-14 08:44:43,006] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E300_fastqc.html [2021-02-14 08:44:43,007] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E300_fastqc.html [2021-02-14 08:44:43,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E222_fastqc.html [2021-02-14 08:44:43,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E222_fastqc.html [2021-02-14 08:44:43,133] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E377_fastqc.html [2021-02-14 08:44:43,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E377_fastqc.html [2021-02-14 08:44:43,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E211_fastqc.html [2021-02-14 08:44:43,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E211_fastqc.html [2021-02-14 08:44:43,247] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E368_fastqc.html [2021-02-14 08:44:43,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E368_fastqc.html [2021-02-14 08:44:43,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E243_fastqc.html [2021-02-14 08:44:43,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E243_fastqc.html [2021-02-14 08:44:43,372] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E423_fastqc.html [2021-02-14 08:44:43,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E423_fastqc.html [2021-02-14 08:44:43,428] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E426_fastqc.html [2021-02-14 08:44:43,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E426_fastqc.html [2021-02-14 08:44:43,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E207_fastqc.html [2021-02-14 08:44:43,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E207_fastqc.html [2021-02-14 08:44:43,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E369_fastqc.html [2021-02-14 08:44:43,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E369_fastqc.html [2021-02-14 08:44:43,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E390_fastqc.html [2021-02-14 08:44:43,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E390_fastqc.html [2021-02-14 08:44:43,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_undetermined_fastqc.html [2021-02-14 08:44:43,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_undetermined_fastqc.html [2021-02-14 08:44:43,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_undetermined_fastqc.html [2021-02-14 08:44:43,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_undetermined_fastqc.html [2021-02-14 08:44:43,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E394_fastqc.html [2021-02-14 08:44:43,795] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E394_fastqc.html [2021-02-14 08:44:43,862] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E249_fastqc.html [2021-02-14 08:44:43,864] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E249_fastqc.html [2021-02-14 08:44:43,906] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E181_fastqc.html [2021-02-14 08:44:43,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E181_fastqc.html [2021-02-14 08:44:43,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E219_fastqc.html [2021-02-14 08:44:43,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E219_fastqc.html [2021-02-14 08:44:44,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E388_fastqc.html [2021-02-14 08:44:44,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E388_fastqc.html [2021-02-14 08:44:44,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E452_fastqc.html [2021-02-14 08:44:44,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E452_fastqc.html [2021-02-14 08:44:44,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E252_fastqc.html [2021-02-14 08:44:44,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E252_fastqc.html [2021-02-14 08:44:44,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E379_fastqc.html [2021-02-14 08:44:44,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E379_fastqc.html [2021-02-14 08:44:44,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E417_fastqc.html [2021-02-14 08:44:44,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E417_fastqc.html [2021-02-14 08:44:44,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E455_fastqc.html [2021-02-14 08:44:44,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E455_fastqc.html [2021-02-14 08:44:44,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E414_fastqc.html [2021-02-14 08:44:44,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E414_fastqc.html [2021-02-14 08:44:44,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E449_fastqc.html [2021-02-14 08:44:44,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E449_fastqc.html [2021-02-14 08:44:44,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E329_fastqc.html [2021-02-14 08:44:44,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E329_fastqc.html [2021-02-14 08:44:44,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E409_fastqc.html [2021-02-14 08:44:44,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E409_fastqc.html [2021-02-14 08:44:44,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E378_fastqc.html [2021-02-14 08:44:44,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E378_fastqc.html [2021-02-14 08:44:44,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E459_fastqc.html [2021-02-14 08:44:44,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E459_fastqc.html [2021-02-14 08:44:44,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E217_fastqc.html [2021-02-14 08:44:44,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E217_fastqc.html [2021-02-14 08:44:44,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E395_fastqc.html [2021-02-14 08:44:44,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E395_fastqc.html [2021-02-14 08:44:44,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E288_fastqc.html [2021-02-14 08:44:44,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E288_fastqc.html [2021-02-14 08:44:44,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E451_fastqc.html [2021-02-14 08:44:44,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E451_fastqc.html [2021-02-14 08:44:44,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E329_fastqc.html [2021-02-14 08:44:44,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E329_fastqc.html [2021-02-14 08:44:44,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E337_fastqc.html [2021-02-14 08:44:44,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E337_fastqc.html [2021-02-14 08:44:45,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E388_fastqc.html [2021-02-14 08:44:45,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E388_fastqc.html [2021-02-14 08:44:45,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E449_fastqc.html [2021-02-14 08:44:45,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E449_fastqc.html [2021-02-14 08:44:45,141] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E377_fastqc.html [2021-02-14 08:44:45,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E377_fastqc.html [2021-02-14 08:44:45,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E383_fastqc.html [2021-02-14 08:44:45,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E383_fastqc.html [2021-02-14 08:44:45,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E456_fastqc.html [2021-02-14 08:44:45,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E456_fastqc.html [2021-02-14 08:44:45,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E351_fastqc.html [2021-02-14 08:44:45,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E351_fastqc.html [2021-02-14 08:44:45,402] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E403_fastqc.html [2021-02-14 08:44:45,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E403_fastqc.html [2021-02-14 08:44:45,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E54_fastqc.html [2021-02-14 08:44:45,466] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E54_fastqc.html [2021-02-14 08:44:45,520] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E325_fastqc.html [2021-02-14 08:44:45,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E325_fastqc.html [2021-02-14 08:44:45,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E431_fastqc.html [2021-02-14 08:44:45,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E431_fastqc.html [2021-02-14 08:44:45,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E426_fastqc.html [2021-02-14 08:44:45,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n02_E426_fastqc.html [2021-02-14 08:44:45,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E428_fastqc.html [2021-02-14 08:44:45,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HVHVCDRXX_n01_E428_fastqc.html [2021-02-14 08:44:46,189] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-02-14 08:44:46,190] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-02-14 08:44:46,240] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 95 samples (table) [2021-02-14 08:44:46,242] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-02-14 08:44:46,251] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-02-14 08:44:46,255] multiqc [DEBUG ] No samples found: conpair [2021-02-14 08:44:46,260] multiqc [DEBUG ] No samples found: peddy [2021-02-14 08:44:46,264] multiqc [DEBUG ] No samples found: somalier [2021-02-14 08:44:46,269] multiqc [DEBUG ] No samples found: methylQA [2021-02-14 08:44:46,276] multiqc [DEBUG ] No samples found: mosdepth [2021-02-14 08:44:46,280] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-02-14 08:44:46,283] multiqc [DEBUG ] No samples found: qualimap [2021-02-14 08:44:46,288] multiqc [DEBUG ] No samples found: preseq [2021-02-14 08:44:46,292] multiqc [DEBUG ] No samples found: quast [2021-02-14 08:44:46,296] multiqc [DEBUG ] No samples found: qorts [2021-02-14 08:44:46,301] multiqc [DEBUG ] No samples found: rna_seqc [2021-02-14 08:44:46,305] multiqc [DEBUG ] No samples found: rockhopper [2021-02-14 08:44:46,310] multiqc [DEBUG ] No samples found: rsem [2021-02-14 08:44:46,320] multiqc [DEBUG ] No samples found: rseqc [2021-02-14 08:44:46,324] multiqc [DEBUG ] No samples found: busco [2021-02-14 08:44:46,328] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-02-14 08:44:46,332] multiqc [DEBUG ] No samples found: disambiguate [2021-02-14 08:44:46,337] multiqc [DEBUG ] No samples found: supernova [2021-02-14 08:44:46,349] multiqc [DEBUG ] No samples found: deeptools [2021-02-14 08:44:46,353] multiqc [DEBUG ] No samples found: sargasso [2021-02-14 08:44:46,358] multiqc [DEBUG ] No samples found: verifybamid [2021-02-14 08:44:46,362] multiqc [DEBUG ] No samples found: mirtrace [2021-02-14 08:44:46,366] multiqc [DEBUG ] No samples found: happy [2021-02-14 08:44:46,371] multiqc [DEBUG ] No samples found: mirtop [2021-02-14 08:44:46,376] multiqc [DEBUG ] No samples found: homer [2021-02-14 08:44:46,380] multiqc [DEBUG ] No samples found: macs2 [2021-02-14 08:44:46,384] multiqc [DEBUG ] No samples found: theta2 [2021-02-14 08:44:46,389] multiqc [DEBUG ] No samples found: snpeff [2021-02-14 08:44:46,395] multiqc [DEBUG ] No samples found: gatk [2021-02-14 08:44:46,399] multiqc [DEBUG ] No samples found: htseq [2021-02-14 08:44:46,403] multiqc [DEBUG ] No samples found: bcftools [2021-02-14 08:44:46,408] multiqc [DEBUG ] No samples found: featureCounts [2021-02-14 08:44:46,413] multiqc [DEBUG ] No samples found: fgbio [2021-02-14 08:44:46,426] multiqc [DEBUG ] No samples found: dragen [2021-02-14 08:44:46,430] multiqc [DEBUG ] No samples found: dedup [2021-02-14 08:44:46,435] multiqc [DEBUG ] No samples found: damageprofiler [2021-02-14 08:44:46,454] multiqc [DEBUG ] No samples found: biobambam2 [2021-02-14 08:44:46,459] multiqc [DEBUG ] No samples found: mtnucratio [2021-02-14 08:44:46,461] multiqc [DEBUG ] No samples found: picard [2021-02-14 08:44:46,465] multiqc [DEBUG ] No samples found: prokka [2021-02-14 08:44:46,469] multiqc [DEBUG ] No samples found: samblaster [2021-02-14 08:44:46,478] multiqc [DEBUG ] No samples found: samtools [2021-02-14 08:44:46,483] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-02-14 08:44:46,487] multiqc [DEBUG ] No samples found: bamtools [2021-02-14 08:44:46,491] multiqc [DEBUG ] No samples found: jellyfish [2021-02-14 08:44:46,498] multiqc [DEBUG ] No samples found: vcftools [2021-02-14 08:44:46,503] multiqc [DEBUG ] No samples found: longranger [2021-02-14 08:44:46,508] multiqc [DEBUG ] No samples found: stacks [2021-02-14 08:44:46,512] multiqc [DEBUG ] No samples found: varscan2 [2021-02-14 08:44:46,525] multiqc [DEBUG ] No samples found: bbmap [2021-02-14 08:44:46,529] multiqc [DEBUG ] No samples found: bismark [2021-02-14 08:44:46,534] multiqc [DEBUG ] No samples found: biscuit [2021-02-14 08:44:46,539] multiqc [DEBUG ] No samples found: hicexplorer [2021-02-14 08:44:46,543] multiqc [DEBUG ] No samples found: hicup [2021-02-14 08:44:46,548] multiqc [DEBUG ] No samples found: hicpro [2021-02-14 08:44:46,552] multiqc [DEBUG ] No samples found: salmon [2021-02-14 08:44:46,556] multiqc [DEBUG ] No samples found: kallisto [2021-02-14 08:44:46,561] multiqc [DEBUG ] No samples found: slamdunk [2021-02-14 08:44:46,565] multiqc [DEBUG ] No samples found: star [2021-02-14 08:44:46,569] multiqc [DEBUG ] No samples found: hisat2 [2021-02-14 08:44:46,574] multiqc [DEBUG ] No samples found: tophat [2021-02-14 08:44:46,578] multiqc [DEBUG ] No samples found: bowtie2 [2021-02-14 08:44:46,583] multiqc [DEBUG ] No samples found: bowtie1 [2021-02-14 08:44:46,587] multiqc [DEBUG ] No samples found: snpsplit [2021-02-14 08:44:46,591] multiqc [DEBUG ] No samples found: kat [2021-02-14 08:44:46,596] multiqc [DEBUG ] No samples found: leehom [2021-02-14 08:44:46,600] multiqc [DEBUG ] No samples found: adapterRemoval [2021-02-14 08:44:46,604] multiqc [DEBUG ] No samples found: clipandmerge [2021-02-14 08:44:46,608] multiqc [DEBUG ] No samples found: cutadapt [2021-02-14 08:44:46,612] multiqc [DEBUG ] No samples found: flexbar [2021-02-14 08:44:46,617] multiqc [DEBUG ] No samples found: kaiju [2021-02-14 08:44:46,622] multiqc [DEBUG ] No samples found: kraken [2021-02-14 08:44:46,626] multiqc [DEBUG ] No samples found: malt [2021-02-14 08:44:46,630] multiqc [DEBUG ] No samples found: trimmomatic [2021-02-14 08:44:46,635] multiqc [DEBUG ] No samples found: sickle [2021-02-14 08:44:46,639] multiqc [DEBUG ] No samples found: skewer [2021-02-14 08:44:46,643] multiqc [DEBUG ] No samples found: sortmerna [2021-02-14 08:44:46,647] multiqc [DEBUG ] No samples found: biobloomtools [2021-02-14 08:44:46,651] multiqc [DEBUG ] No samples found: fastq_screen [2021-02-14 08:44:46,656] multiqc [DEBUG ] No samples found: afterqc [2021-02-14 08:44:46,660] multiqc [DEBUG ] No samples found: fastp [2021-02-14 08:45:01,694] multiqc.modules.fastqc.fastqc [INFO ] Found 190 reports [2021-02-14 08:45:01,699] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n02_E433' [2021-02-14 08:45:01,699] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n01_E433' [2021-02-14 08:45:01,699] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n02_E339' [2021-02-14 08:45:01,699] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n02_E395' [2021-02-14 08:45:01,699] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n01_E277' [2021-02-14 08:45:01,699] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n01_E339' [2021-02-14 08:45:01,699] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n02_E181' [2021-02-14 08:45:01,699] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n01_E181' [2021-02-14 08:45:01,700] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n02_E417' [2021-02-14 08:45:01,700] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n02_E277' [2021-02-14 08:45:01,700] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n01_E395' [2021-02-14 08:45:01,700] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'HVHVCDRXX_n01_E417' [2021-02-14 08:45:19,418] multiqc [DEBUG ] No samples found: pycoqc [2021-02-14 08:45:19,422] multiqc [DEBUG ] No samples found: minionqc [2021-02-14 08:45:19,426] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-02-14 08:45:19,431] multiqc [DEBUG ] No samples found: clusterflow [2021-02-14 08:45:19,435] multiqc [DEBUG ] No samples found: bcl2fastq [2021-02-14 08:45:19,440] multiqc [DEBUG ] No samples found: interop [2021-02-14 08:45:19,444] multiqc [DEBUG ] No samples found: ivar [2021-02-14 08:45:19,448] multiqc [DEBUG ] No samples found: flash [2021-02-14 08:45:19,452] multiqc [DEBUG ] No samples found: seqyclean [2021-02-14 08:45:19,452] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-02-14 08:45:19,452] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-02-14 08:45:19,452] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-02-14 08:45:19,452] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-02-14 08:45:19,669] multiqc [INFO ] Compressing plot data [2021-02-14 08:45:19,735] multiqc [INFO ] Report : multiqc_report.html [2021-02-14 08:45:19,736] multiqc [INFO ] Data : multiqc_data [2021-02-14 08:45:19,736] multiqc [DEBUG ] Moving data file from '/state/partition1/job-2761342/tmppbb66a_z/multiqc_data' to '/scratch/gencore/logs/html/HVHVCDRXX/merged/multiqc_data' [2021-02-14 08:45:19,886] multiqc [INFO ] MultiQC complete