FastQCFastQC Report
Wed 17 Feb 2021
HVHT2DRXX_l01_n01_mb400.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVHT2DRXX_l01_n01_mb400.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72602827
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCATCTCGTATGC5334620.7347675318483121TruSeq Adapter, Index 20 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCATCGCGTATGC1484830.20451407491336393TruSeq Adapter, Index 20 (97% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)