HVHNYAFXX_n01_ds774-5-2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVHNYAFXX_n01_ds774-5-2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12618448
Sequences flagged as poor quality	0
Sequence length	75
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAG	314650	2.4935713171699088	TruSeq Adapter, Index 1 (100% over 63bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGA	15182	0.12031590572786764	TruSeq Adapter, Index 1 (100% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAAAAAG	54060	43.759502	69
GCTTGAA	56060	42.752205	60
TGCTTGA	56065	42.385334	59
CTGCTTG	56660	41.8856	58
GAAAAAA	61855	39.165195	64
TGAAAAA	62415	38.64245	63
CCGTCTT	61885	38.544437	51
CTTGAAA	62525	38.51377	61
TTGAAAA	62420	38.47907	62
TGCCGTC	61970	38.47487	49
ATGCCGT	62490	38.17679	48
GCCGTCT	62670	38.028603	50
CGTCTTC	63040	37.871227	52
TATGCCG	63510	37.519897	47
GTATGCC	63745	37.419464	46
TCTGCTT	67615	35.23705	57
TCTTCTG	68200	35.005894	54
CTTCTGC	68535	34.98049	55
GATCTCG	66770	34.912975	40
CTCGTAT	68605	34.532307	43