HVHNYAFXX_n01_ds131-005-2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVHNYAFXX_n01_ds131-005-2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10346563
Sequences flagged as poor quality	0
Sequence length	75
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAG	218898	2.115659084084251	RNA PCR Primer, Index 23 (100% over 43bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACGTGT	14370	43.465767	1
AAAAAAG	41515	41.758743	69
GCTTGAA	45140	38.359417	60
TGCTTGA	45910	37.42299	59
CTGCTTG	46125	37.16627	58
GAAAAAA	50520	34.895863	64
CTTGAAA	50375	34.523754	61
TCACGGC	5535	33.658325	57
ACGTGTG	18860	33.624504	2
CACGGCT	5565	33.60087	58
TCTGCTT	51435	33.429947	57
GTCACGG	6110	33.42696	56
CATCTCG	6990	32.426838	66
TGAAAAA	54385	32.301723	63
CGTCTTC	53875	32.17205	52
CGGCTAC	5780	31.992882	60
CTTCTGC	54050	31.946608	55
GTCTTCT	54560	31.704899	53
TTGAAAA	55070	31.661867	62
TTCTGCT	54590	31.567396	56