HVHNVAFXX_n02_3024_d8_nw.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVHNVAFXX_n02_3024_d8_nw.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	159241
Sequences flagged as poor quality	0
Sequence length	150
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGCAAAAGCAGGGGAAGTGGGAGAGGGAAAAGGAGAAGGAAGCTTCCCT	286	0.17960198692547774	No Hit
GTATATACATACATATATACTTACACAGTTTGAGCATTCACAGGCCACTA	252	0.15825070176650485	No Hit
GAGCAAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG	250	0.15699474381597703	No Hit
GTACTATGTTCTTTTCCATGATCGCCTGGTCCAATCGCACGCAAAGAGGG	234	0.1469470802117545	No Hit
GAGCAAAAGCAGGTGCATAAAGATCTGGGTCCTTCTGACCTGGCTATTCA	231	0.1450631432859628	No Hit
GAGCAAAAGCAGGTAGATATTTAAAGATGAGTCTTCTAACCGAGGTCGAA	179	0.11240823657223957	No Hit
TGTATATACAGCTCGCTGAAGAGGTCCATGACCTCAAAAAAGATCAAATG	178	0.11178025759697564	No Hit
CTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCC	175	0.10989632067118393	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCAAA	420	0.0	83.99505	1
GTCTAAA	30	0.001987	71.995766	2
CGTTACA	65	1.4593388E-7	66.45763	3
GAGCGAA	120	0.0	65.99612	1
AGCAAAA	550	0.0	62.83266	2
CTATAGG	50	2.0754621E-4	57.59661	1
GCAAAAG	620	0.0	56.899876	3
AGCGAAA	145	0.0	54.61747	2
CGAAAGC	155	0.0	51.093765	4
GTTACAC	85	9.314863E-7	50.820534	4
TACCTAT	90	1.3813769E-6	47.997173	7
CAAAAGC	765	0.0	46.11493	4
GCTTTCG	80	3.876972E-5	44.99735	1
CTACACC	65	7.573864E-4	44.305084	1
AAAGCAG	1015	0.0	42.559067	6
TTACACC	105	3.9907536E-6	41.140434	5
GCGAAAG	195	3.6379788E-12	40.61299	3
TTTCGCT	90	7.767081E-5	39.997646	3
TCGCTCC	90	7.767081E-5	39.997646	5
CAAGGTA	75	0.0015312624	38.39774	4