HVHNVAFXX_n02_3022_d8_nw.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVHNVAFXX_n02_3022_d8_nw.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	88450
Sequences flagged as poor quality	0
Sequence length	150
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGCAAAAGCAGGGGAAGTGGGAGAGGGAAAAGGAGAAGGAAGCTTCCCT	162	0.1831543244771057	No Hit
GTATATACATACATATATACTTACACAGTTTGAGCATTCACAGGCCACTA	146	0.16506500847936686	No Hit
GAGCAAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG	144	0.16280384397964953	No Hit
GAGCAAAAGCAGGTGCATAAAGATCTGGGTCCTTCTGACCTGGCTATTCA	124	0.14019219898247598	No Hit
GAGCAAAAGCAGGTAGATATTTAAAGATGAGTCTTCTAACCGAGGTCGAA	122	0.13793103448275862	No Hit
CTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCC	110	0.12436404748445451	No Hit
GTACTATGTTCTTTTCCATGATCGCCTGGTCCAATCGCACGCAAAGAGGG	102	0.11531938948558507	No Hit
TGTATATACAGCTCGCTGAAGAGGTCCATGACCTCAAAAAAGATCAAATG	95	0.10740531373657433	No Hit
CTTCTTTCTTGATCCGTCCAGACTCGAAGTCGACCCTGGCATCAATCCGG	94	0.10627473148671567	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGTCGA	10	0.007246465	143.87733	1
TGCTACC	10	0.007246465	143.87733	2
GAGCGAA	50	2.055458E-10	100.714134	1
GAGCAAA	295	0.0	90.22816	1
AGCAAAA	320	0.0	85.42716	2
GCAAAAG	350	0.0	80.160225	3
GCGAAAG	80	1.03682396E-10	71.93867	3
CAAAAGC	395	0.0	69.20682	4
CGAAAGC	85	1.7826096E-10	67.70698	4
AGCGAAA	75	5.0913513E-9	67.14275	2
AAAAGCA	475	0.0	57.550934	5
AAAGCAG	600	0.0	55.152977	6
CAGTTTA	55	3.328253E-4	52.31903	9
TCGGGGC	45	0.009909998	47.95911	7
GTAGAAA	90	1.3818953E-6	47.95911	2
CAGCTCG	60	5.112762E-4	47.95911	9
AAGCAGG	725	0.0	46.6361	7
TAGAAAC	110	1.0440999E-7	45.779152	3
TAAGGTC	65	7.585128E-4	44.269947	4
TATACAG	90	7.775338E-5	39.965927	5