HVHNVAFXX_n01_3024_d8_nw.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVHNVAFXX_n01_3024_d8_nw.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	159241
Sequences flagged as poor quality	0
Sequence length	150
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATATACATACATATATACTTACACAGTTTGAGCATTCACAGGCCACTA	328	0.20597710388656187	No Hit
GAGCAAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG	323	0.20283720901024235	No Hit
GAGCAAAAGCAGGGGAAGTGGGAGAGGGAAAAGGAGAAGGAAGCTTCCCT	273	0.17143826024704692	No Hit
GAGCAAAAGCAGGTGCATAAAGATCTGGGTCCTTCTGACCTGGCTATTCA	262	0.16453049151914392	No Hit
GTACTATGTTCTTTTCCATGATCGCCTGGTCCAATCGCACGCAAAGAGGG	229	0.14380718533543496	No Hit
TGTATATACAGCTCGCTGAAGAGGTCCATGACCTCAAAAAAGATCAAATG	211	0.13250356378068462	No Hit
GAGCAAAAGCAGGTAGATATTTAAAGATGAGTCTTCTAACCGAGGTCGAA	208	0.1306196268548929	No Hit
CTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCC	186	0.11680408939908692	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTCGC	10	0.007233469	143.9997	8
CGTCGCT	10	0.007233469	143.9997	9
GAGCGAA	115	0.0	93.942345	1
GAGCAAA	505	0.0	82.718864	1
CGTTACA	65	1.6407284E-9	77.53829	3
GCAAAAG	550	0.0	75.92711	3
AGCGAAA	140	0.0	71.99985	2
ACCGATA	30	0.0019865546	71.99984	8
AGCAAAA	595	0.0	71.394806	2
GCGAAAG	175	0.0	61.71415	3
CAAAAGC	685	0.0	60.96337	4
GTTACAC	85	1.3687895E-8	59.293983	4
CGAAAGC	195	0.0	55.38449	4
AAAGCAG	960	0.0	54.74988	6
GAACGGA	40	0.006209315	53.999886	6
TTACACC	95	3.291825E-8	53.052517	5
AAAAGCA	835	0.0	50.87414	5
ATCTAGA	95	1.9995987E-6	45.487873	1
ACACCTT	115	1.481003E-7	43.825993	7
CAGCTCG	115	1.481003E-7	43.825993	9