HVHNVAFXX_n01_3022_d8_nw.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HVHNVAFXX_n01_3022_d8_nw.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	88450
Sequences flagged as poor quality	0
Sequence length	150
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATATACATACATATATACTTACACAGTTTGAGCATTCACAGGCCACTA	205	0.2317693612210288	No Hit
GAGCAAAAGCAGGGGAAGTGGGAGAGGGAAAAGGAGAAGGAAGCTTCCCT	186	0.21028829847371394	No Hit
GAGCAAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG	181	0.20463538722442057	No Hit
GAGCAAAAGCAGGTGCATAAAGATCTGGGTCCTTCTGACCTGGCTATTCA	149	0.1684567552289429	No Hit
GAGCAAAAGCAGGTAGATATTTAAAGATGAGTCTTCTAACCGAGGTCGAA	124	0.14019219898247598	No Hit
GTACTATGTTCTTTTCCATGATCGCCTGGTCCAATCGCACGCAAAGAGGG	98	0.11079706048615037	No Hit
GAGCAAAAGCAGGCAAACCATTTGAATGGATGTCAATCCGACTCTACTTT	96	0.10853589598643301	No Hit
GTATAGACATCTTAACAATATTGTTCTTCCAATCCATGAGCATGGATTGT	96	0.10853589598643301	No Hit
TGTATATACAGCTCGCTGAAGAGGTCCATGACCTCAAAAAAGATCAAATG	93	0.10514414923685697	No Hit
CTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCC	90	0.10175240248728094	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCAAA	315	0.0	107.608955	1
GAGCGAA	55	4.274625E-10	91.79023	1
AGCAAAA	420	0.0	80.61542	2
GCAAAAG	425	0.0	77.971954	3
CAAAAGC	440	0.0	75.271255	4
AGCGAAA	70	2.917659E-9	72.03931	2
GCGAAAG	75	5.0349627E-9	67.23669	3
AAAAGCA	535	0.0	61.905327	5
ATTATAT	35	0.0036466958	61.74798	3
AAAGCAG	620	0.0	61.547176	6
CTATCCC	40	0.006200656	53.998943	4
GCAGGTA	70	1.7539081E-5	51.427563	9
AAGCAGG	765	0.0	50.822533	7
TAACCTG	60	5.0918147E-4	47.999058	5
ATAACCT	60	5.0918147E-4	47.999058	4
CGAAAGC	105	7.1933755E-8	47.999054	4
ACAGTAT	65	7.554087E-4	44.306824	8
AGCAGGT	265	0.0	40.753914	8
GCAGGGG	355	0.0	36.506325	9
AGCAGGG	580	0.0	35.999294	8